View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_41 (Length: 365)

Name: NF5110_low_41
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_41
NF5110_low_41
[»] chr6 (3 HSPs)
chr6 (1-264)||(10106262-10106523)
chr6 (275-317)||(10106166-10106208)
chr6 (14-53)||(10068740-10068779)
[»] chr7 (3 HSPs)
chr7 (89-165)||(26157360-26157436)
chr7 (190-264)||(26157198-26157271)
chr7 (277-317)||(26156996-26157036)
[»] chr1 (5 HSPs)
chr1 (75-167)||(20446851-20446943)
chr1 (75-167)||(20532613-20532706)
chr1 (75-134)||(19535920-19535979)
chr1 (225-264)||(20446744-20446783)
chr1 (225-264)||(20532508-20532547)
[»] chr8 (1 HSPs)
chr8 (106-151)||(18294967-18295010)
[»] chr5 (1 HSPs)
chr5 (75-167)||(19109465-19109554)
[»] chr4 (1 HSPs)
chr4 (95-151)||(13058861-13058918)
[»] chr2 (1 HSPs)
chr2 (82-134)||(14848599-14848650)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10106523 - 10106262
Alignment:
Q  1 ttttatatgtttacatatgggtttttaaatggattatgtaatattattgtgatatttctttgnnnnnnnnnnnngaaacgacaaatattattagaaccgg 100  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||             ||||| |||||||||||||||||||    
T  10106523 ttttatatgttaacatatgggtttttaattggattatgtaatattattgtgatttttctttggttttttttttt-aaacggcaaatattattagaaccgg 10106425  T
Q  101 aactcttagcaagacgcttagaggcggagaaaaatgatacaaggatgccgccaatacgcgtaacatctaacgccaaagaaaactccactgaaataaaaat 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10106424 aactcttagcaagacgcttagaggcggagaaaaacgatacaaggatgccgccaatacgcgtaacatctaacgccaaagaaaactcaactgaaataaaaat 10106325  T
Q  201 gacaagcctaagacagcacaagcttatgatgctgaaatccaattaacaccatcagaattcagtc 264  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10106324 gacaagcctaagacagcacaagc-tatgatgctgaaatccaattaacaccatcagaattcagtc 10106262  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 10106208 - 10106166
Alignment:
Q  275 aacagcagaacagaccccacaatattccaagcgacaaaacacc 317  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  10106208 aacagcagaacagacctcacaatattccaagcgacgaaacacc 10106166  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 10068779 - 10068740
Alignment:
Q  14 catatgggtttttaaatggattatgtaatattattgtgat 53  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  10068779 catatgggtttttaattggattttgtaatattattgtgat 10068740  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 26157436 - 26157360
Alignment:
Q  89 tattagaaccggaactcttagcaagacgcttagaggcggagaaaaatgatacaaggatgccgccaatacgcgtaaca 165  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||    
T  26157436 tattggaaccggaactcttagcaagacgcttagaggtggagaaaaacgatacaaggattccgccaatacgtgtaaca 26157360  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 26157271 - 26157198
Alignment:
Q  190 gaaataaaaatgacaagcctaagacagcacaagcttatgatgctgaaatccaattaacaccatcagaattcagtc 264  Q
    ||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  26157271 gaaataaaactgtcaagcctaagacagcacaagct-atgattctgaaatccaattaacaccatcagaattcagtc 26157198  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 26157036 - 26156996
Alignment:
Q  277 cagcagaacagaccccacaatattccaagcgacaaaacacc 317  Q
    ||||||||||||| ||| ||||||||||||||| |||||||    
T  26157036 cagcagaacagacaccaaaatattccaagcgacgaaacacc 26156996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 20446943 - 20446851
Alignment:
Q  75 gaaacgacaaatattattagaaccggaactcttagcaagacgcttagaggcggagaaaaatgatacaaggatgccgccaatacgcgtaacatc 167  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||| | | ||||||||||    
T  20446943 gaaacggcaaatattattggaaccgaaactcttagcaagacgcttaggggcggagaaaaacggtacaaggatgccgccgaaatgcgtaacatc 20446851  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 20532706 - 20532613
Alignment:
Q  75 gaaacgacaaatattattagaaccggaactcttagcaagacgcttagaggcggaga-aaaatgatacaaggatgccgccaatacgcgtaacatc 167  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||| |||| | ||||||||||||||| | | ||||||||||    
T  20532706 gaaacggcaaatattattggaaccgaaactcttagcaagacgcttaggggcggagaaaaaacggtacaaggatgccgccgaaatgcgtaacatc 20532613  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 19535979 - 19535920
Alignment:
Q  75 gaaacgacaaatattattagaaccggaactcttagcaagacgcttagaggcggagaaaaa 134  Q
    |||||| |||||||||||  ||||| ||||||| |||||||||  |||||||||||||||    
T  19535979 gaaacggcaaatattattgaaaccgaaactcttcgcaagacgcaaagaggcggagaaaaa 19535920  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 20446783 - 20446744
Alignment:
Q  225 tatgatgctgaaatccaattaacaccatcagaattcagtc 264  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  20446783 tatgatgctgaaatccaattaaaaacatcagaattcagtc 20446744  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 20532547 - 20532508
Alignment:
Q  225 tatgatgctgaaatccaattaacaccatcagaattcagtc 264  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  20532547 tatgatgctgaaatccaattaaaaacatcagaattcagtc 20532508  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 18295010 - 18294967
Alignment:
Q  106 ttagcaagacgcttagaggcggagaaaaatgatacaaggatgccgc 151  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||    
T  18295010 ttagcaagacgcttagaggcggagaaaaa--atacaaagatgccgc 18294967  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 19109465 - 19109554
Alignment:
Q  75 gaaacgacaaatattattagaaccggaactcttagcaagacgcttagaggcggagaaaaatgatacaaggatgccgccaatacgcgtaacatc 167  Q
    |||||| |||||||||||  ||||| ||||||  |||||||||  |||||||||||||||  ||||||||||||| |  ||| ||||||||||    
T  19109465 gaaacggcaaatattattgaaaccgaaactctc-gcaagacgcaaagaggcggagaaaaa--atacaaggatgccacatataggcgtaacatc 19109554  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 13058918 - 13058861
Alignment:
Q  95 aaccggaactcttagcaagacgcttagaggcggagaaaaatg-atacaaggatgccgc 151  Q
    ||||| ||||||||| |||||||  ||||||||||||||| | |||||||||||||||    
T  13058918 aaccgaaactcttagtaagacgcaaagaggcggagaaaaaagaatacaaggatgccgc 13058861  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 14848599 - 14848650
Alignment:
Q  82 caaatattattagaaccggaactcttagcaagacgcttagaggcggagaaaaa 134  Q
    |||||||||||  ||||| |||||| |||||||||||||||||||| ||||||    
T  14848599 caaatattattgaaaccgaaactct-agcaagacgcttagaggcggtgaaaaa 14848650  T

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