View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_43 (Length: 348)
Name: NF5110_low_43
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 28923707 - 28923372
Alignment:
| Q |
18 |
acatttgagtccaggaacatgataatcaatggctac--ggtgtgaaaattgttgattactaacataaacagttcccactttaatttcaaagtaaaacaag |
115 |
Q |
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| T |
28923707 |
acatttgagtccaggaacataataatcaatggctacacggtgtgaaaattgttgattactaacataaacagttcccactttaatttcaaagtaaaacaag |
28923608 |
T |
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| Q |
116 |
cgtcatcgctgacatgcggtggtgaagctgatcactcaccaaccacgtctat-aaaacaaaaggctaagataattcactcgaatcatattatttac---- |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
28923607 |
cgtcatcgctgacatgcggtggtgaagctgatcactcaccaaccacgtctataaaaagaaaaggct-agataattcactcgaatcatattatttacatta |
28923509 |
T |
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| Q |
211 |
-attagatcagactcagactctgtgaaggaacaac-----atcaaatcaatggccactatgtatgaaataaaactctctgtttttacaattcacttttct |
304 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28923508 |
gattagatcagactcagactctgtaaaggaacaacatcaaatcaaatcaatggccactatgtatgaaataaaactctctgtttttacaattcacttttct |
28923409 |
T |
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| Q |
305 |
accatttttgtttctaataactaacactcttcttctc |
341 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
28923408 |
accatttttgtttctaataactaacactcttcttctc |
28923372 |
T |
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