View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_47 (Length: 335)

Name: NF5110_low_47
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_47
NF5110_low_47
[»] chr1 (1 HSPs)
chr1 (22-319)||(28977597-28977894)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 28977597 - 28977894
Alignment:
Q  22 gccggcaaagaaaccaccgtcgccgccgaagccgccacctccttcacttctttcccttcttcacaacccaaaacacctaccaatctccaacatcgactca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28977597 gccggcaaagaaaccaccgtcgccgccgaagccgccacctccttcacttctttcccttcttcacaacccaaaacacctaccaatctccaacatcgactca 28977696  T
Q  122 ccgtctcgataaacggaatcaaaaccgaaccaaaacaagcaccaagcggtggtgcagaagaataagaaagcgttaacaatgtgttggagaagattttgtt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28977697 ccgtctcgataaacggaatcaaaaccgaaccaaaacaagcaccaagcggtggtgcagaagaataagaaagcgttaacaatgtgttggagaagattttgtt 28977796  T
Q  222 caagtttagcctccagtgtgaaaacggtgcggttaaagcttctgggttgtatttatgtgtttcacagaagaggagaaggagtaacacagcgtcggtgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  28977797 caagtttagcctccagtgtgaaaacggtgcggttaaagcttctgggttgtatttatgtgtttcacagaacaacagaaggagtaacacagcgtcggtgt 28977894  T

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