View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_48 (Length: 319)
Name: NF5110_low_48
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 39117805 - 39117514
Alignment:
| Q |
19 |
atccatcactttgtggatgatacgcagtggacaagcgtaactttgtgccactaaaatgaaacagttcacgccaaaaacaactgagaaaatcgggtcacgg |
118 |
Q |
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| T |
39117805 |
atccatcactttgtggatgatacgcagtggacaagcgtaactttgtgccactaaaatgaaacagttcacgccaaaaacaactgagaaaatcgggtcacgg |
39117706 |
T |
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| Q |
119 |
ccagatgtacaagagtcttcgccattctatgtagcttgcatatatttgagcaaacaactttgccactttgacagcagtgaaattggtcggcagcatacca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39117705 |
ccagatgtacaagagtcttcgccattctatgtagcttgcatatatttgagcaaacaactttgcaactttgacagcagtgaaattggtcggcagcatacca |
39117606 |
T |
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| Q |
219 |
aagtgtgaagcctttgagagtcgactgaccaccactaatatcactgtgttattttgaaaagaagggagcccaccccctcggtcatttcatctca |
312 |
Q |
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| T |
39117605 |
aagtgtgaagcctttgagagtcgaccgaccaccactaatatcac--tgttattttgaaaagaagggagcccaccccctcggtcatttcatctca |
39117514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 38612511 - 38612802
Alignment:
| Q |
19 |
atccatcactttgtggatgatacgcagtggacaagcgtaactttgtgccactaaaatgaaacagttcacgccaaaaacaactgagaaaatcgggtcacgg |
118 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38612511 |
atccatcactttgtggatgatacacagtagacaagcgtaactttgtgccactaagacgaaacagttcacgccaaaaacgactgagaaaatcgggtcacgg |
38612610 |
T |
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| Q |
119 |
ccagatgtacaagagtcttcgccattctatgtagcttgcatat-atttgagcaaacaactttgccactttgacagcagtgaaattggtcggcagcatacc |
217 |
Q |
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| T |
38612611 |
taagat--acatgagtctt-gccattttatgcagcttgcatatcatttgaacgaacaactctgcaactttgacaacattgaaattgatcggcagtatacc |
38612707 |
T |
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| Q |
218 |
aaagtgtgaagcctttgagagtcgactgaccaccactaatatcactgtgttattttgaaaagaagggagcccaccccctcggtcatttcatctca |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38612708 |
aaagtgtgaagcctttgagagtcgaccgaccaccactaatatcacagtgtgattttgaaaagaagggagcccaccccctcgatcatttcatctca |
38612802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 39119898 - 39119769
Alignment:
| Q |
183 |
actttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgactgaccaccactaatatcactgtgttattttgaaaagaag |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39119898 |
actttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgaccgaccaccactaatatcactgtgttattttgaaaagaag |
39119799 |
T |
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| Q |
283 |
ggagcccaccccctcggtcatttcatctca |
312 |
Q |
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| T |
39119798 |
ggagcccaccaccccaatcatttcatctca |
39119769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 38611553 - 38611694
Alignment:
| Q |
19 |
atccatcactttgtggatgatacgcagtggacaagcgtaactttgtgccactaaaatgaaacagttcacgccaaaaacaactgag-aaaatcgggtcacg |
117 |
Q |
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|||||||||||||||||||||| ||| ||| || |||||||||||||||||||| | ||||||||| ||||||||||| |||||| |||||||||||||| |
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| T |
38611553 |
atccatcactttgtggatgatatgcaatggccaggcgtaactttgtgccactaagacgaaacagttaacgccaaaaacgactgagaaaaatcgggtcacg |
38611652 |
T |
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| Q |
118 |
gccagatgtacaagagtcttcgccattctatgtagcttgcatat |
161 |
Q |
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| |||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
38611653 |
gtcaga--tacaagagtcttcgccgttccatgtagcttgcatat |
38611694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 39120001 - 39119910
Alignment:
| Q |
34 |
gatgatacgcagtggacaagcgtaactttgtgccactaaaatgaaacagttcacgccaaaaacaactgag-aaaatcgggtcacggccagat |
124 |
Q |
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|||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||| |||| |||||| ||||||||||||||| ||||| |
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| T |
39120001 |
gatgatacgcagtggacaggcgtaactttgtgccactaagacgaaacagttaacgcccaaaatgactgagaaaaatcgggtcacgggcagat |
39119910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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