View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_49 (Length: 319)
Name: NF5110_low_49
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 11209030 - 11209312
Alignment:
| Q |
28 |
gcaatggtagtagaatagcatatactaaaatatagacattgctgaagtttgctatcctgaaataccagtggattggaaatgcttagttcagtcaaggnnn |
127 |
Q |
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| T |
11209030 |
gcaatggtagtagaatagcatatactaaaatatagacatagctgaagtttgctatcctgaaataccagtggattggaaatgcttagttcagtcaaggaaa |
11209129 |
T |
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| Q |
128 |
nnnnnnn-cactacttaatggttcatcattggagtaataaatattggttatatccattgtagactctacaagcctatttggtttggcaaaaagcagtata |
226 |
Q |
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| T |
11209130 |
aaaaaaaacagtacttaatggttcatcattggagtaataaatattggttatatccattgtagactctacaagcctatttggtttggcaaaaagcagtata |
11209229 |
T |
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| Q |
227 |
tatatttaagattagagannnnnnnnngacaaattttaacagtgagattagaataattgatgttgggtctgattcatgtcatt |
309 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11209230 |
tatatttaagattagagatttttttttgacaaattttaacagtgagattagaataattgatgttgggtctgattcatgtcatt |
11209312 |
T |
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