View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_50 (Length: 311)
Name: NF5110_low_50
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 7969580 - 7969855
Alignment:
| Q |
20 |
catcaaacatcgttgtcatcattatcatcaccaatgcatatcatttagaaaccatcgcatctctattctcaa--ccctcttttttattatttggcattgt |
117 |
Q |
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| T |
7969580 |
catcaaacatcgttgtcatcattatcatcaccaatgcatatcatttagaaaccatcgcatctctattctcaaaaccctcttttttattatttggcattgt |
7969679 |
T |
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| Q |
118 |
cacaaacttttgtttctcagaagtttcattagctcattttgattgcaatcaatctcaaaaccattctctctaatggagaagactcaactggataacctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969680 |
cacaaacttttgtttctcagaagtttcattagctcattttgattgcaatcaatctcaaaaccattctctctaatggagaagactcaactggataacctat |
7969779 |
T |
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| Q |
218 |
ttcctctaactccaagtgccgtattctctacaaagaagggacgtagcggatatgaaccatcagacacagagacgga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969780 |
ttcctctaactccaagtgccgtattctctacaaagaagggacgtagcggatatgaaccatcagacacagagacgga |
7969855 |
T |
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