View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_53 (Length: 307)
Name: NF5110_low_53
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 31089972 - 31089717
Alignment:
| Q |
1 |
aaagaaatcattaagataccatattgcaatcaaaatcattctaataagcccttcaagcatctagatcttaccaaggagtctattttagttctaactgatc |
100 |
Q |
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| T |
31089972 |
aaagaaattaataagataccatattgcaatcataatcatcctaataagcccttcaaacatttggatcttac-aaggagtcaattttagatttaactgatc |
31089874 |
T |
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| Q |
101 |
caaaaacagaagttattaaac--acaggagagctataacttaataatttagatataggaaaatgtt-ataaacacattccattatatgcttgttcaatac |
197 |
Q |
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| T |
31089873 |
cgaaaacggaacttattaaacttaaaagagagctataacttattaatttagatataggaaaatgtttatatacacattcctttaaatgcttgttcaatac |
31089774 |
T |
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| Q |
198 |
gatattgttctcctactattcattttcaaatttaatttttaacttttggtttaatta |
254 |
Q |
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| T |
31089773 |
gatattgttctcctactattcattttcaaatttaatttataacttttggtttaatta |
31089717 |
T |
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