View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_62 (Length: 287)
Name: NF5110_low_62
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_62 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 80 - 287
Target Start/End: Original strand, 7707410 - 7707618
Alignment:
| Q |
80 |
ttgaatgaatatttgtgagtggaagaagttgtatttagagatatatttgctagtgggtttgggctagaaaattgggccttttccccaaactcgtag-aaa |
178 |
Q |
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| T |
7707410 |
ttgaatgaatatttgtgagtggaagaagttgtatttatagatatatttgctactggatttgggctagaaaattaggtgtgttccccaaactcgtagaaaa |
7707509 |
T |
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| Q |
179 |
aatacagcaaaacgtacttttttagcacaaaacgcgcatcgtacgtcaggttaggtgtgtggcagctaacaaagagcacagttctctctgtctcatgcac |
278 |
Q |
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| T |
7707510 |
aataaagcaaaacgtattttttcagcacaaaacgtgcatcgtgcgtcaggttaggcgtgtggcagctaacaaagagcaaaattctctctgtcccatgcac |
7707609 |
T |
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| Q |
279 |
atgggcaac |
287 |
Q |
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| T |
7707610 |
ctgggcaac |
7707618 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 7706019 - 7706087
Alignment:
| Q |
10 |
aatatataatgtttaaatctatattctatatcagatgatcaaacatggtatagaattatcaaaaaagaa |
78 |
Q |
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| T |
7706019 |
aatatataatgtttaaatctatattctatatcagatgatcaaacatggtatagaattatcaaaaaagaa |
7706087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 52998757 - 52998722
Alignment:
| Q |
81 |
tgaatgaatatttgtgagtggaagaagttgtattta |
116 |
Q |
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| T |
52998757 |
tgaatgaatatttatgagtggaagaagttgtattta |
52998722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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