View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_63 (Length: 287)

Name: NF5110_low_63
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_63
NF5110_low_63
[»] chr2 (5 HSPs)
chr2 (81-286)||(31610532-31610729)
chr2 (234-287)||(11931860-11931913)
chr2 (234-287)||(20387264-20387317)
chr2 (235-283)||(9006806-9006854)
chr2 (235-287)||(16754647-16754699)
[»] chr8 (3 HSPs)
chr8 (231-287)||(33700084-33700140)
chr8 (236-287)||(18021064-18021115)
chr8 (236-278)||(3448335-3448377)
[»] chr1 (3 HSPs)
chr1 (235-286)||(15382440-15382491)
chr1 (234-287)||(44647727-44647780)
chr1 (234-282)||(27984753-27984801)
[»] chr6 (2 HSPs)
chr6 (231-287)||(10298585-10298641)
chr6 (234-287)||(2360185-2360238)
[»] chr5 (2 HSPs)
chr5 (231-287)||(32020225-32020281)
chr5 (7-35)||(6231365-6231393)
[»] chr3 (5 HSPs)
chr3 (231-285)||(41252778-41252832)
chr3 (234-287)||(15332820-15332873)
chr3 (234-287)||(26406021-26406074)
chr3 (234-287)||(44561979-44562032)
chr3 (234-286)||(47164463-47164515)
[»] chr7 (4 HSPs)
chr7 (226-282)||(28601479-28601535)
chr7 (235-287)||(26189805-26189857)
chr7 (231-287)||(38767077-38767133)
chr7 (7-35)||(41806603-41806631)
[»] chr4 (4 HSPs)
chr4 (234-286)||(19897817-19897869)
chr4 (234-287)||(4455488-4455541)
chr4 (234-287)||(36522982-36523035)
chr4 (231-287)||(20875258-20875314)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 286
Target Start/End: Original strand, 31610532 - 31610729
Alignment:
Q  81 ctatttattcatagttatcgagatgtcttataaaattccctttgtccctctttatacaatcatttaacaaaaattacgggtattnnnnnnngttggtgcg 180  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||| |||||||       |||||||||    
T  31610532 ctatttattcatagttatcgagatgtcttataatattccctttgtccctctttatttaaccatttaacaaaaattatgggtattaaaaaaagttggtgcg 31610631  T
Q  181 taataaatttattacaaatatgtgtgaccatattactattatttaatctcttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaac 280  Q
    ||||||||||||||||||||||||||        |||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  31610632 taataaatttattacaaatatgtgtg--------actattatttcatctcttccaaaatacatgtggcattcaaccattacacacatgtcaatacacaac 31610723  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 11931913 - 11931860
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| ||||| ||||||| |||| ||||| ||||||||||||||||||    
T  11931913 caaaatacatgtcgcagtcaaccactgcaaacatgccaatacacaactttgacc 11931860  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 20387264 - 20387317
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| ||||| |||| || |||||||||| ||||||||||||||||||    
T  20387264 caaaatacatgtcgcagtcaatcagtgcacacatgccaatacacaactttgacc 20387317  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 9006806 - 9006854
Alignment:
Q  235 aaaatacatatcgcattcaaccattgcacacatgtcaatacacaacttt 283  Q
    ||||||||| ||| | ||||||| ||||||||| |||||||||||||||    
T  9006806 aaaatacatgtcgtagtcaaccactgcacacatatcaatacacaacttt 9006854  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 16754647 - 16754699
Alignment:
Q  235 aaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||||||||  |||||| | || ||||| ||||||||||||||||||    
T  16754647 aaaatacatatcgcaggcaaccactacatacatgccaatacacaactttgacc 16754699  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 33700084 - 33700140
Alignment:
Q  231 ttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    ||||||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||    
T  33700084 ttccaaaatacatgtcgcagtcaaccactgcacacatgccaatacacaactttgacc 33700140  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 18021115 - 18021064
Alignment:
Q  236 aaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||| | ||| ||||||| |||||||||| ||||||||||||||||||    
T  18021115 aaatacatgttgcagtcaaccactgcacacatggcaatacacaactttgacc 18021064  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 3448377 - 3448335
Alignment:
Q  236 aaatacatatcgcattcaaccattgcacacatgtcaatacaca 278  Q
    |||||||||||||| ||||||| | ||||||||||||||||||    
T  3448377 aaatacatatcgcaatcaaccacttcacacatgtcaatacaca 3448335  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 15382440 - 15382491
Alignment:
Q  235 aaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgac 286  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  15382440 aaaatacatgtcgcagtcaatcattgcacacatgtcaatacacaactttgac 15382491  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 44647727 - 44647780
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    ||||||||| |||||| ||||||||| || |||||||||| |||||||||||||    
T  44647727 caaaatacacatcgcagtcaaccatttcatacatgtcaatgcacaactttgacc 44647780  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 27984801 - 27984753
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactt 282  Q
    |||||||||| |||||  ||| || ||||||||||||||||||||||||    
T  27984801 caaaatacatgtcgcagccaatcactgcacacatgtcaatacacaactt 27984753  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 10298585 - 10298641
Alignment:
Q  231 ttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    ||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||||    
T  10298585 ttccaaaatacatgtcgcagtcaaccactgtacacatgccaatacacaactttgacc 10298641  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 2360238 - 2360185
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| || || ||||||| | |||||||| ||||||||||||||||||    
T  2360238 caaaatacatgtcacagtcaaccactacacacatgacaatacacaactttgacc 2360185  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 32020281 - 32020225
Alignment:
Q  231 ttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    ||||||||| ||| ||||| ||||||| ||||||||||||||||| |||||||||||    
T  32020281 ttccaaaatgcatgtcgcagtcaaccactgcacacatgtcaatacgcaactttgacc 32020225  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 6231393 - 6231365
Alignment:
Q  7 ctaagaaggtctcccaccctaaacggcac 35  Q
    |||||||||||||||||||||||||||||    
T  6231393 ctaagaaggtctcccaccctaaacggcac 6231365  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 41252778 - 41252832
Alignment:
Q  231 ttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttga 285  Q
    ||||||||||||| ||||| ||||||| |||||||||| ||||||| ||||||||    
T  41252778 ttccaaaatacatgtcgcagtcaaccagtgcacacatgccaatacaaaactttga 41252832  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 15332820 - 15332873
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| || || ||||||| | |||||||| ||||||||||||||||||    
T  15332820 caaaatacatgtcccagtcaaccactacacacatgccaatacacaactttgacc 15332873  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 26406021 - 26406074
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| ||||| ||||||| |||||| |||  |||||||||||||||||    
T  26406021 caaaatacatgtcgcagtcaaccactgcacatatgctaatacacaactttgacc 26406074  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 44562032 - 44561979
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| ||||| ||||||| | |||||||| |||| |||||||||||||    
T  44562032 caaaatacatgtcgcagtcaaccacttcacacatgccaattcacaactttgacc 44561979  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 47164463 - 47164515
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgac 286  Q
    |||||||||| ||||| |||| |||||||||||| |||||||| || ||||||    
T  47164463 caaaatacatgtcgcagtcaatcattgcacacatatcaatacataattttgac 47164515  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 28601479 - 28601535
Alignment:
Q  226 atctcttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactt 282  Q
    |||| ||||||||||||| ||||| ||||| |  |||||||||||||||||||||||    
T  28601479 atctgttccaaaatacatgtcgcagtcaacgacggcacacatgtcaatacacaactt 28601535  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 26189805 - 26189857
Alignment:
Q  235 aaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    ||||||||| ||| | ||||||||| |||||||| ||| ||||||||||||||    
T  26189805 aaaatacatgtcgtagtcaaccatttcacacatgccaaaacacaactttgacc 26189857  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 38767077 - 38767133
Alignment:
Q  231 ttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||| |||||||| | ||| ||||||| | |||||||||||||||| ||||||||||    
T  38767077 ttcctaaatacatgttgcagtcaaccaattcacacatgtcaatacaaaactttgacc 38767133  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 41806631 - 41806603
Alignment:
Q  7 ctaagaaggtctcccaccctaaacggcac 35  Q
    |||||||||||||||||||||||||||||    
T  41806631 ctaagaaggtctcccaccctaaacggcac 41806603  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 19897869 - 19897817
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgac 286  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||||| ||||||    
T  19897869 caaaatacatgtcgcagtcaaccgttgtacacatgtcaatacacaattttgac 19897817  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 4455541 - 4455488
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||||||||| ||||| ||||||| |||| |||||  |||||||||||||||||    
T  4455541 caaaatacatgtcgcagtcaaccactgcagacatgctaatacacaactttgacc 4455488  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 36522982 - 36523035
Alignment:
Q  234 caaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    |||| ||||| ||||| ||||||||| ||||||||||||| || ||||||||||    
T  36522982 caaagtacatgtcgcagtcaaccatttcacacatgtcaatgcataactttgacc 36523035  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 20875258 - 20875314
Alignment:
Q  231 ttccaaaatacatatcgcattcaaccattgcacacatgtcaatacacaactttgacc 287  Q
    ||||||||||||| | ||| | ||||||||||||||||  |||| ||||||||||||    
T  20875258 ttccaaaatacatgtagcagttaaccattgcacacatgctaatatacaactttgacc 20875314  T

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