View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_64 (Length: 283)

Name: NF5110_low_64
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_64
NF5110_low_64
[»] chr6 (13 HSPs)
chr6 (13-283)||(8830456-8830726)
chr6 (13-283)||(8834166-8834436)
chr6 (13-251)||(8647422-8647672)
chr6 (18-168)||(8507758-8507908)
chr6 (18-282)||(8842974-8843250)
chr6 (18-170)||(5082685-5082837)
chr6 (42-170)||(8548691-8548819)
chr6 (33-216)||(8514349-8514544)
chr6 (42-227)||(8527230-8527427)
chr6 (42-227)||(8541062-8541259)
chr6 (54-170)||(8625512-8625628)
chr6 (58-170)||(8627385-8627489)
chr6 (175-216)||(8632059-8632100)
[»] scaffold0155 (2 HSPs)
scaffold0155 (18-170)||(26121-26273)
scaffold0155 (23-231)||(34214-34434)
[»] chr8 (1 HSPs)
chr8 (93-170)||(4538660-4538737)
[»] chr4 (3 HSPs)
chr4 (74-170)||(10779859-10779955)
chr4 (74-170)||(10973468-10973564)
chr4 (124-169)||(10782165-10782210)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 8830726 - 8830456
Alignment:
13 aaaatacaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagat 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
8830726 aaaatacaaaatgagtcaatattcttctctcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatgtagat 8830627  T
113 gtcatttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagcgaggtgtagatcttgtgaaccttgcacaatacacaattgatg 212  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8830626 ctcatttgcagagaagcctccgatcattcatattgttcaaatcttctaaactcaaagcgaggtgtagatcttgtgaaccttgcacaatacacaattgatg 8830527  T
213 tgctcaataaaaattggacccacgcatatgacctaatcagggacatgactgaaattgctgagaatgatacc 283  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8830526 tgctcaataacaattggacccacgcatatgacctaatcagggacatgactgaaattgctgagaatgatacc 8830456  T

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Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 8834436 - 8834166
Alignment:
13 aaaatacaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagat 112  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
8834436 aaaacacaaaatgagtcaatattcttctctcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatgtagat 8834337  T
113 gtcatttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagcgaggtgtagatcttgtgaaccttgcacaatacacaattgatg 212  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
8834336 gtcatttgcagagaatcctccgatcattcatattgttcaaatcttctcaactcaaagcgaggtgtagatcttgtgaaccttgcacaatacacaattgatg 8834237  T
213 tgctcaataaaaattggacccacgcatatgacctaatcagggacatgactgaaattgctgagaatgatacc 283  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8834236 tgctcaataacaattggacccacgcatatgacctaatcagggacatgactgaaattgctgagaatgatacc 8834166  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 8647672 - 8647422
Alignment:
13 aaaatacaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagat 112  Q
    |||| |||||||||||||||| |  ||| |||||||| ||||| || ||||||||||||| |||||||||||| |||||||||||||||||||| |||||    
8647672 aaaacacaaaatgagtcaatacttctctctcttgttgatgctttttgttctatgtgttgcttcctccaattcaatttcagccaaagttgttgatgtagat 8647573  T
113 gtcatttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagc------------gaggtgtagatcttgtgaaccttgcacaat 200  Q
    ||||||||||||||||||||| ||| | ||||||||| ||||||||| ||||||||||             |||||||||||||||  |||||||| |||    
8647572 gtcatttgcagagaagcctccaatcctacatattgttcaaatcttctcaactcaaagcaaggaggtgcaaaaggtgtagatcttgtcgaccttgcagaat 8647473  T
201 acacaattgatgtgctcaataaaaattggacccacgcatatgacctaatca 251  Q
    |||||||||||||||| | | | ||||||||| || ||||| |||||||||    
8647472 acacaattgatgtgcttagtgagaattggaccaacacatataacctaatca 8647422  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 8507908 - 8507758
Alignment:
18 acaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcat 117  Q
    ||||||||||||||||||  ||| |||  |||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||    
8507908 acaaaatgagtcaatatttctctctctacttggtgattcttattctatgtgttgcttcctccaattcaatttcagccaaagttgttgatgtagatgtcat 8507809  T
118 ttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaa 168  Q
    ||||| |||||||||| ||| ||||| ||||| ||||||||| ||||||||    
8507808 ttgcaaagaagcctccaatccttcattttgttcaaatcttctcaactcaaa 8507758  T

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Target: chr6; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 8842974 - 8843250
Alignment:
18 acaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcat 117  Q
    |||||||||||| ||| |  ||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||| ||||    
8842974 acaaaatgagtcgatacttctctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatatcat 8843073  T
118 ttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaag------------cgaggtgtagatcttgtgaaccttgcacaatacaca 205  Q
    ||||| |||||||||| ||| | | ||||||| ||||||||| |||||||||              |||||||||||||||  | |||||||||||||||    
8843074 ttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacaca 8843173  T
206 attgatgtgctcaataaaaattggacccacgcatatgacctaatcagggacatgactgaaattgctgagaatgatac 282  Q
    ||||||||||| ||| | |||| | ||| ||||| ||||||||| | | || |||  || |||||||| ||||||||    
8843174 attgatgtgcttaatgacaattcgtcccgcgcatttgacctaatgaagaacttgatggatattgctgaaaatgatac 8843250  T

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Target: chr6; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 5082685 - 5082837
Alignment:
18 acaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcat 117  Q
    |||||||||||||| | || ||| |||||||||||||| || |||| |||||  | |||||||||||| |||||||||||||| ||||| | ||||||||    
5082685 acaaaatgagtcaagactcctctctcttgttggtgctttttgttctctgtgtaacttcctccaattcaatttcagccaaagttattgatgttgatgtcat 5082784  T
118 ttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagc 170  Q
    ||||| |||||||||| |||| |||||||||| ||||||||| ||||||||||    
5082785 ttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagc 5082837  T

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Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 8548691 - 8548819
Alignment:
42 tcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattc 141  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||||| ||||  ||||| ||| ||| |||    
8548691 tcttgttagtgcttcttattctatgtgttgcttccttcaattcaatttcagccaaagttgttgatgtagatgtcatctgcaatgaagcttccaatccttc 8548790  T
142 atattgtttaaatcttctaaactcaaagc 170  Q
    ||||||||   ||||||| ||||||||||    
8548791 atattgttcgtatcttctcaactcaaagc 8548819  T

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Target: chr6; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 8514349 - 8514544
Alignment:
33 attcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctc 132  Q
    |||| ||| ||||| |||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||  ||||| ||||||||| |||||||||    
8514349 attcctctctcttgctggtgcttcttattctatgttttgcttcctccaattcaatttcagccgaagttgttgacgtagatatcatttgcaaagaagcctc 8514448  T
133 cgatcattcatattgtttaaatcttctaaactcaaagc------------gaggtgtagatcttgtgaaccttgcacaatacacaattgatgtgct 216  Q
      |||| || ||||| | ||||||||| ||||| ||||             |||||||||||||||  ||||||||||||||||||||||||||||    
8514449 taatcaatcgtattgctcaaatcttctcaactcgaagccaggaggtgcaaaaggtgtagatcttgttgaccttgcacaatacacaattgatgtgct 8514544  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 8527230 - 8527427
Alignment:
42 tcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattc 141  Q
    |||||||||||||| | |||||||||||||| |||||||||||| | |||||||||||||||||| | ||| ||||||||| |||||| ||| ||| |||    
8527230 tcttgttggtgcttttgattctatgtgttgcttcctccaattcaatctcagccaaagttgttgatgtggatatcatttgcaaagaagcatccaatccttc 8527329  T
142 atattgtttaaatcttctaaactcaaagc------------gaggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataaaaatt 227  Q
     ||||| | ||||||||| || || ||||             |||||||||||||||  ||||||||| |||||||||||||||||| ||||| ||||    
8527330 gtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgatacacaattgatgtgcttaataataatt 8527427  T

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Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 8541259 - 8541062
Alignment:
42 tcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattc 141  Q
    |||||||||||||| | |||||||||||||| |||||||||||| | |||||||||||||||||| | ||| ||||||||| |||||| ||| ||| |||    
8541259 tcttgttggtgcttttgattctatgtgttgcttcctccaattcaatctcagccaaagttgttgatgtggatatcatttgcaaagaagcatccaatccttc 8541160  T
142 atattgtttaaatcttctaaactcaaagc------------gaggtgtagatcttgtgaaccttgcacaatacacaattgatgtgctcaataaaaatt 227  Q
     ||||| | ||||||||| || || ||||             |||||||||||||||  ||||||||| |||||||||||||||||| ||||| ||||    
8541159 gtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgatacacaattgatgtgcttaataataatt 8541062  T

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Target: chr6; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 8625628 - 8625512
Alignment:
54 ttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattcatattgtttaaa 153  Q
    |||||||||||| |||||  |||| ||||||| |||||||||||||||||||| |||||||||| ||||  ||||| ||| ||| ||||||||||| | |    
8625628 ttcttattctatttgttgtttccttcaattcaatttcagccaaagttgttgatgtagatgtcatctgcaatgaagcttccaatccttcatattgttcata 8625529  T
154 tcttctaaactcaaagc 170  Q
    |||||| ||||||||||    
8625528 tcttctcaactcaaagc 8625512  T

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Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 8627385 - 8627489
Alignment:
58 tattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattcatattgtttaaatctt 157  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||        ||| ||||||||||| |||||||    
8627385 tattctatgtgttgcttcctccaattcaatttcagccaaagttattgatgtagatgtcatttgcagaga--------atccttcatattgttcaaatctt 8627476  T
158 ctaaactcaaagc 170  Q
    || ||||||||||    
8627477 ctcaactcaaagc 8627489  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 8632100 - 8632059
Alignment:
175 tgtagatcttgtgaaccttgcacaatacacaattgatgtgct 216  Q
    ||||||| ||||  ||||||||||||||||||||||||||||    
8632100 tgtagatattgttgaccttgcacaatacacaattgatgtgct 8632059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 26273 - 26121
Alignment:
18 acaaaatgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcat 117  Q
    |||||||||||||||| || ||| ||||||| ||| || ||||||||||| || | |||||||||||| |||||||||||||||||||| ||||||| ||    
26273 acaaaatgagtcaatactcctctctcttgttagtgtttgttattctatgtttttcttcctccaattcaatttcagccaaagttgttgatgtagatgttat 26174  T
118 ttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagc 170  Q
    ||||| |||||| ||| ||| ||||||||||| |||||| || ||||||||||    
26173 ttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagc 26121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 34214 - 34434
Alignment:
23 atgagtcaatattcttctatcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatctagatgtcatttgca 122  Q
    ||||| ||||| || ||| ||||||||| |||| ||||||||  |||||  ||||| || ||| | ||  |||||||||||||  || | |||||||| |    
34214 atgaggcaatactcctctctcttgttggggctttttattctacatgttgtttcctctaaatcaatatccaccaaagttgttgaagtaaaagtcatttgta 34313  T
123 gagaagcctccgatcattcatattgtttaaatcttctaaactcaaagcgagg------------tgtagatcttgtgaaccttgcacaatacacaattga 210  Q
     ||||||| || ||| ||||||||| ||||||||||| |||||||| | |||            |||||||||||| ||||||||| | |||||||||||    
34314 aagaagcccccaatccttcatattgcttaaatcttctcaactcaaaaccaggacgagtaaaaggtgtagatcttgttaaccttgcagagtacacaattga 34413  T
211 tgtgctcaataaaaattggac 231  Q
    |||||||||| | ||||||||    
34414 tgtgctcaatgacaattggac 34434  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 4538660 - 4538737
Alignment:
93 ccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagc 170  Q
    |||||||| ||||| | ||||||||||||| |||||||||| |||| |||||||||| ||||||||| ||||||||||    
4538660 ccaaagttattgatgttgatgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagc 4538737  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 10779955 - 10779859
Alignment:
74 tcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagc 170  Q
    |||||||| ||||||||  | |||||||| ||  || |||||||||||| |||||||||  ||| ||||||||| ||||||||||| ||||||||||    
10779955 tcctccaaatcagtttccactaaagttgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagc 10779859  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 10973564 - 10973468
Alignment:
74 tcctccaattcagtttcagccaaagttgttgatctagatgtcatttgcagagaagcctccgatcattcatattgtttaaatcttctaaactcaaagc 170  Q
    |||||||| ||||||||  | |||||||| ||  || |||||||||||| |||||||||  ||| ||||||||| ||||||||||| ||||||||||    
10973564 tcctccaaatcagtttccactaaagttgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagc 10973468  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 10782210 - 10782165
Alignment:
124 agaagcctccgatcattcatattgtttaaatcttctaaactcaaag 169  Q
    |||||||||| ||| ||||||||| ||||||||||| |||||||||    
10782210 agaagcctccaatccttcatattgcttaaatcttctcaactcaaag 10782165  T

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