View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_66 (Length: 275)

Name: NF5110_low_66
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_66
NF5110_low_66
[»] chr7 (2 HSPs)
chr7 (109-250)||(30766125-30766266)
chr7 (134-250)||(17278880-17278996)
[»] chr6 (4 HSPs)
chr6 (109-250)||(27129322-27129463)
chr6 (109-250)||(12260923-12261067)
chr6 (109-250)||(16146557-16146698)
chr6 (109-250)||(20746058-20746199)
[»] chr2 (5 HSPs)
chr2 (109-250)||(28189927-28190068)
chr2 (109-250)||(19298006-19298147)
chr2 (109-250)||(20686109-20686250)
chr2 (134-250)||(8029470-8029586)
chr2 (109-250)||(40468523-40468668)
[»] chr5 (2 HSPs)
chr5 (109-250)||(6794220-6794361)
chr5 (109-250)||(23083019-23083160)
[»] chr4 (2 HSPs)
chr4 (110-250)||(9086771-9086913)
chr4 (112-250)||(40680933-40681074)
[»] chr8 (1 HSPs)
chr8 (109-250)||(13462586-13462730)
[»] chr1 (4 HSPs)
chr1 (109-250)||(36142594-36142736)
chr1 (109-231)||(49653166-49653287)
chr1 (109-250)||(47112573-47112713)
chr1 (109-224)||(35122683-35122798)
[»] chr3 (4 HSPs)
chr3 (110-250)||(32304709-32304848)
chr3 (109-250)||(42540638-42540778)
chr3 (109-231)||(17509910-17510031)
chr3 (109-166)||(34817830-34817887)
[»] scaffold0202 (1 HSPs)
scaffold0202 (109-166)||(21708-21765)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 30766266 - 30766125
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30766266 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 30766167  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30766166 tcacttttcttgataattaatttttgggtttttattgctgga 30766125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 17278996 - 17278880
Alignment:
Q  134 aaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagtcacttttcttgataattaattttt 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17278996 aaattggtgctgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagtcacttttcttgataattaattttt 17278897  T
Q  234 gggtttttattgctgga 250  Q
    || ||||||||||||||    
T  17278896 ggatttttattgctgga 17278880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 27129463 - 27129322
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27129463 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 27129364  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27129363 tcacttttcttgataattaatttttgggtttttattgctgga 27129322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 12260923 - 12261067
Alignment:
Q  109 ctcaatctacctcagaaaaaa---ttgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcacca 205  Q
    |||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12260923 ctcaatctacctcagaaaaaaaaattggaaattggtgctgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcacca 12261022  T
Q  206 aagtcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  12261023 aagtcacttttcttgataattaatttttggatttttattgctgga 12261067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 16146698 - 16146557
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  16146698 ctcaatctacctcagaaaaaattggaaattggtgccattcttcaaccttggattcaattgggtgttgtgctagttatcccaattggctttagcaccaaag 16146599  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16146598 tcacttttcttgataattaatttttgggtttttattgctgga 16146557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 20746058 - 20746199
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    ||||||||||||||||| |||||| |||||||||   ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20746058 ctcaatctacctcagaacaaattggaaattggtgcccttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcaccaaag 20746157  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20746158 tcacttttcttgataattaatttttgggtttttattgctgga 20746199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 28190068 - 28189927
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28190068 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaaa 28189969  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28189968 tcacttttcttgataattaatttttgggtttttattgctgga 28189927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 19298006 - 19298147
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  19298006 ctcaatctacctcagaaaaaattggaaattggtgcccttcttcaaccttggattcaattgggtgttgtgctagttatcctaattggatttagcaccaaag 19298105  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19298106 tcacttttcttgataattaatttttgggtttttattgctgga 19298147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 20686250 - 20686109
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||  |||||||||||| || ||||| ||||||||||||||    
T  20686250 ctcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttgaattcaattgggcattgtgctagttatcccaattgaatttagcaccaaag 20686151  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20686150 tcacttttcttgataattaatttttgggtttttattgctgga 20686109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 8029470 - 8029586
Alignment:
Q  134 aaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagtcacttttcttgataattaattttt 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029470 aaattggtgctgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagtcacttttcttgataattaattttt 8029569  T
Q  234 gggtttttattgctgga 250  Q
    || ||||||||||||||    
T  8029570 ggatttttattgctgga 8029586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 40468523 - 40468668
Alignment:
Q  109 ctcaatctacctcagaaaaaa-ttgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtg---ctagttaaccaaattggatttagcacc 204  Q
    ||||||||||||||||||||| ||| ||| |||||  ||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  40468523 ctcaatctacctcagaaaaaaattggaaaatggtgccgttattcaaccttggattcaattgggtgttgtggtgctagttaaccaaattggatttagcacc 40468622  T
Q  205 aaagtcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  40468623 aaaatcacttttcttgataattaatttttggatttttattgttgga 40468668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 6794220 - 6794361
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6794220 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaaa 6794319  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  6794320 tcacttttcttaataattaatttttgggtttttattgctgga 6794361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 23083160 - 23083019
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23083160 ctcaatctacctcagaaaaaattggaaaatggtgtcgttcttcaaccttggattcaattgggtgttgtgctagtcaaccaaattggatttagcaccaaag 23083061  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||| ||||||||||||||||||||||| ||||||||||||||    
T  23083060 tcaattttcttgataattaatttttggatttttattgctgga 23083019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 9086771 - 9086913
Alignment:
Q  110 tcaatctacctcag--aaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaa 207  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9086771 tcaatctacctcaggaaaaaaattggaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaa 9086870  T
Q  208 gtcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9086871 gtcacttttcttgataattaatttttggatttttattgctgga 9086913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 40681074 - 40680933
Alignment:
Q  112 aatctacctcagaaaaaa--ttgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagt 209  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40681074 aatctacctcagaaaaaaaattggaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagt 40680975  T
Q  210 cacttttcttgataattaat-ttttgggtttttattgctgga 250  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  40680974 cacttttcttgataattaattttttggatttttattgctgga 40680933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 13462730 - 13462586
Alignment:
Q  109 ctcaatctacctcagaaaaaa---ttgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcacca 205  Q
    |||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13462730 ctcaatctacctcagaaaaaaattttggaaattggtgatgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcacca 13462631  T
Q  206 aagtcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  13462630 aagtcacttttcttgataattaatttttggatttttattgctgga 13462586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 36142736 - 36142594
Alignment:
Q  109 ctcaatctacctcagaaaaaa-ttgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaa 207  Q
    |||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  36142736 ctcaatctacctcaaaaaaaaattgaaaatcggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcaccaaa 36142637  T
Q  208 gtcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  36142636 gtcacttttcttgataattaatttctgggtttttattgctgga 36142594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 49653287 - 49653166
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  49653287 ctcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcaccaaag 49653188  T
Q  209 tcacttttcttgataattaattt 231  Q
    |||| ||||||||||||||||||    
T  49653187 tcac-tttcttgataattaattt 49653166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 47112713 - 47112573
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    ||||||||||||||||| || ||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  47112713 ctcaatctacctcagaataa-ttggaaattggtgtcgttcttcaatcttgaattcaattgggtgttgtgctagttatcccaattggatttagcaccaaag 47112615  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  47112614 tcactttttttgataattaatttttggatttttattgctgga 47112573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 35122798 - 35122683
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  35122798 ctcaatctacctcagaaaaaattggaaatcggtgtcgttcatcaaccttggattcaattgggtgttgtgctagttatcccagttggatttagcaccaaag 35122699  T
Q  209 tcacttttcttgataa 224  Q
     |||||||||||||||    
T  35122698 ccacttttcttgataa 35122683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 32304709 - 32304848
Alignment:
Q  110 tcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaagt 209  Q
    |||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  32304709 tcaatctacctcagaataa-ttggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcaccaaagt 32304807  T
Q  210 cacttttcttgataattaatttttgggtttttattgctgga 250  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  32304808 cactttttttgataattaatttttggatttttattgctgga 32304848  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 42540638 - 42540778
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  42540638 ctcaatctacctcagaaaaattagaaa-ttggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcaccaaag 42540736  T
Q  209 tcacttttcttgataattaatttttgggtttttattgctgga 250  Q
    |||||||| || ||||||||||||||| ||||||||||||||    
T  42540737 tcacttttttttataattaatttttggatttttattgctgga 42540778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 17509910 - 17510031
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaattgggtgttgtgctagttaaccaaattggatttagcaccaaag 208  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  17509910 ctcaatctacctcagaaaaaattggaaattggtgtcgttcttcaaccttggattcaattgggtgttgtgctagttatcccaattggatttagcaccaaag 17510009  T
Q  209 tcacttttcttgataattaattt 231  Q
    || |  |||||||||||||||||    
T  17510010 tcgc-cttcttgataattaattt 17510031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 34817887 - 34817830
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaat 166  Q
    |||||||||||||||||||||||| |||| ||||  | ||||||||||||||||||||    
T  34817887 ctcaatctacctcagaaaaaattggaaatcggtgccgctcttcaaccttggattcaat 34817830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 21708 - 21765
Alignment:
Q  109 ctcaatctacctcagaaaaaattgaaaattggtgttgttcttcaaccttggattcaat 166  Q
    |||||||||||||| ||||||||| |||| ||||  | ||||||||||||||||||||    
T  21708 ctcaatctacctcataaaaaattggaaatcggtgccgctcttcaaccttggattcaat 21765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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