View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_71 (Length: 260)
Name: NF5110_low_71
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 38393812 - 38393581
Alignment:
| Q |
19 |
agctcccactttttcaattttaagagattaacaaatatatttaagtgtcaatttatctcatcattaattaaaccttaagagattaaaaaatatatttgtg |
118 |
Q |
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| T |
38393812 |
agctcccactttttcaattttaagagattaaaaaatatatttaagtgtcaatttatctcatcattaattaaaccttaagagattaaaaaatatatttgtg |
38393713 |
T |
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| Q |
119 |
tcaatttgtcatcattaattaaacctacacattttctatttgagaggaactatcaagaatgatccaaaaattaatgagtcagataaatatatagtttttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38393712 |
tcaatttgtcatcattaattaaacctacacattttgtatttgagaggaactatcaagaatgatccaaaaattaatgagtcagataaatatatagtttttg |
38393613 |
T |
|
| Q |
219 |
atatataacattatatatgatgtcattttatt |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38393612 |
atatataacattatatatgatgtcattttatt |
38393581 |
T |
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