View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_73 (Length: 255)
Name: NF5110_low_73
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_73 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 32413404 - 32413649
Alignment:
| Q |
19 |
gcatgaatgactatagcaaataccattaaaagcctttctaagttccaattactatttgatnnnnnnntcaatacataatgaatttcatatcaccctaaat |
118 |
Q |
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| T |
32413404 |
gcatgaatgactatagcaaataccattaaaagcctttccaagttccaattactatttgataaaaaaatcaatacataatgaatttcatatcaccctaaat |
32413503 |
T |
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| Q |
119 |
tactactatcattttgcctg--------cctcagagaaa-tgaagaaacgaaagcttgaacataacagcaataatagcgaaaatcaagacagactcggtg |
209 |
Q |
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| T |
32413504 |
tactactatcattttccctgacacttctcctcagagaaaatgaagaaacgaaagcttgaacataacagcaataatagtgaaaatcaagacagactcagtg |
32413603 |
T |
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| Q |
210 |
atttatctgattgtgttttacttcacatactctcctctttgaacac |
255 |
Q |
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| T |
32413604 |
atttatctgattgtgttttacttcacatactctcctctttgaacac |
32413649 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 7115647 - 7115599
Alignment:
| Q |
207 |
gtgatttatctgattgtgttttacttcacatactctcctctttgaacac |
255 |
Q |
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| T |
7115647 |
gtgatttacctgattgtgttttacttcacatactctcttttttgaacac |
7115599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 7120719 - 7120671
Alignment:
| Q |
207 |
gtgatttatctgattgtgttttacttcacatactctcctctttgaacac |
255 |
Q |
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| T |
7120719 |
gtgatttacctgattgtgttttacttcacatactctcttttttgaacac |
7120671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 7124123 - 7124075
Alignment:
| Q |
207 |
gtgatttatctgattgtgttttacttcacatactctcctctttgaacac |
255 |
Q |
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| T |
7124123 |
gtgatttacctgattgtgttttacttcacatactctcttttttgaacac |
7124075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 8656741 - 8656704
Alignment:
| Q |
218 |
gattgtgttttacttcacatactctcctctttgaacac |
255 |
Q |
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| T |
8656741 |
gattgtgttttacttcacatactctcttttttgaacac |
8656704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 38142266 - 38142201
Alignment:
| Q |
188 |
gaaaatcaagacagactcggtgatttatctgattgtgttttacttcacatactctcctctttgaac |
253 |
Q |
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| T |
38142266 |
gaaaatgaagacagactcagcgacttacctgactgtgttatccttcacatactctcctttttgaac |
38142201 |
T |
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