View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_77 (Length: 251)
Name: NF5110_low_77
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1833037 - 1832853
Alignment:
| Q |
1 |
ccttgaaagcatgtataccacatgggtgcaaaaggacatggacacattgataaactgaattctaaaaaattatagcacatgacatggctatagtatagca |
100 |
Q |
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| T |
1833037 |
ccttgaaagcatgtatacaacatgggtgcaaaaggacatggacacattgataaactgaattctaaaaaattatagcacatgacatggctatagtatagca |
1832938 |
T |
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| Q |
101 |
tttgaaaagtaagcataagttattttagacatattaaaatgttattgtgtatctacatttgcagtattctcatctgtactagtat |
185 |
Q |
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| T |
1832937 |
tttgaaaagtaagcataagttattttagacatattaaaatgttattgtgtatctacatttgcagtattctcatctgtactagtat |
1832853 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 946798 - 946676
Alignment:
| Q |
20 |
acatgggtgcaaaaggacatggacacattgataaactgaattctaaaaaattatagcacatgacatggctatagtatagcatttgaaaagtaagca---t |
116 |
Q |
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| T |
946798 |
acatgggtgcaaaaggatacg-acacattgataaactaaattaaaaaaatatttcggacatgacacagctataatatggcattttaaaagttagcagcat |
946700 |
T |
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| Q |
117 |
aagttattttagacatattaaaat |
140 |
Q |
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| T |
946699 |
cagttattttagacataataaaat |
946676 |
T |
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