View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110_low_78 (Length: 251)
Name: NF5110_low_78
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_78 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 2785056 - 2784822
Alignment:
| Q |
17 |
caggttccccaagattgacacaaaagtcatgttttggggataccatttattataatatttcaacagttttatggtttttcaccttacattacataccttg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2785056 |
caggttccacaagattgacacaaaagtcatgttttggggataccatttattataatatttcaacagttttatggtttttcaccttacattacataccttg |
2784957 |
T |
|
| Q |
117 |
ctatttgttattggacaattgttattgtgtttgtgctggtgatggaaaattctcactatgtttgaattatccaaatctccatgcatagaaaactgcagaa |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2784956 |
ctatttgttattggacaattgttatcgtgtttgtgctggtgatggaaaattctcactatgtttgaattatccaaatctccatgcatagaaaactgcagaa |
2784857 |
T |
|
| Q |
217 |
aatgactgtgttagcagtggcaatgtaaggaattt |
251 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2784856 |
aatgattgtgttagcagtggcaatgtaaggaattt |
2784822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University