View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_79 (Length: 251)
Name: NF5110_low_79
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_79 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 100 - 251
Target Start/End: Complemental strand, 9569996 - 9569845
Alignment:
| Q |
100 |
gcaaatactctaactgtatccaccaatcaaacagaagaaaacacaacagcagtgaactttgctaggccgcaaggaagccgcaaaaaacaagcctggaggc |
199 |
Q |
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| T |
9569996 |
gcaaatactctaactgtatccaccaatcaaacagaagaaaacacgacagcggtaaactttgccaggccacaaggaagccgcaaaaaacaagcctggaggc |
9569897 |
T |
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| Q |
200 |
tgcacagaaaaatggtgggatcgacccaagaaacttccaaaacccccactgc |
251 |
Q |
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| T |
9569896 |
tgcccagaaaaacggtgggatcgaccgaagaaacttccagaacccccactgc |
9569845 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 9581509 - 9581588
Alignment:
| Q |
159 |
tgctaggccgcaaggaagccgcaaaaaacaagcctggaggctgcacagaaaaatggtgggatcgacccaagaaacttcca |
238 |
Q |
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| T |
9581509 |
tgctaggccgcaaggaagccacacacaacaagcctgaacgctgcacagaaaaacggtgggatcgacccaggaaacttcca |
9581588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 9587204 - 9587283
Alignment:
| Q |
159 |
tgctaggccgcaaggaagccgcaaaaaacaagcctggaggctgcacagaaaaatggtgggatcgacccaagaaacttcca |
238 |
Q |
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| T |
9587204 |
tgctaggccgcaaggaagccacacacaacaagcctgaacgctgcacagaaaaacggtgggatcgacccaggaaacttcca |
9587283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 9593306 - 9593395
Alignment:
| Q |
162 |
taggccgcaaggaagccgcaaaaaacaagcctggaggctgcacagaaaaatggtgggatcgacccaagaaacttccaaaacccccactgc |
251 |
Q |
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| T |
9593306 |
taggccacgaggaagccgcacaaaacaagcctgaaagctgcacataaaaacggtgggatagactcaagacacttccagaacccccactgc |
9593395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 9605997 - 9606054
Alignment:
| Q |
191 |
cctggaggctgcacagaaaaatggtgggatcgacccaagaaacttccaaaacccccac |
248 |
Q |
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| T |
9605997 |
cctgaaggctgcacagaaaaacagtgggattgacccaagaaacttccagaacccccac |
9606054 |
T |
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