View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110_low_8 (Length: 526)
Name: NF5110_low_8
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 251 - 518
Target Start/End: Complemental strand, 39809421 - 39809154
Alignment:
| Q |
251 |
atgtatgttgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
350 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809421 |
atgtatattgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
39809322 |
T |
|
| Q |
351 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809321 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
39809222 |
T |
|
| Q |
451 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809221 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgct |
39809154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 39809602 - 39809454
Alignment:
| Q |
19 |
atcttctgtatgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgtttgagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809602 |
atcttctgtatgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgtttgagc |
39809503 |
T |
|
| Q |
119 |
tgaaacactcaaaaaatgtagaagactaattaagagttcaaactttggt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809502 |
tgaaacactcaaaaaatgtagaagactaattaagagttcaaactttggt |
39809454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 307 - 480
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
307 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
406 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||||||||||||||| | ||||| || | ||||||||| || || || ||||| ||||||| | |
|
|
| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
|
| Q |
407 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
480 |
Q |
| |
|
|| || |||| | |||||| ||||||||| ||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University