View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110_low_87 (Length: 245)
Name: NF5110_low_87
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_87 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
| [»] scaffold0155 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 8830137 - 8830365
Alignment:
| Q |
17 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8830137 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaactaatttaatttccaagatttaaatattttgttataatttgaaaaacttgagcacc |
8830236 |
T |
|
| Q |
117 |
ttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8830237 |
ttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgac |
8830336 |
T |
|
| Q |
217 |
tctttgaccatggcaggatacttaccaat |
245 |
Q |
| |
|
||||| |||||||| |||||||||||||| |
|
|
| T |
8830337 |
tctttaaccatggccggatacttaccaat |
8830365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 8833847 - 8834075
Alignment:
| Q |
17 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8833847 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaaataatttattttccaagatttaaatattttgtaataatttgaaaaacttgagcacc |
8833946 |
T |
|
| Q |
117 |
ttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgac |
216 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8833947 |
ttgttgaaaatttgcaacatacttcctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgac |
8834046 |
T |
|
| Q |
217 |
tctttgaccatggcaggatacttaccaat |
245 |
Q |
| |
|
||||| |||||||| |||||| ||||||| |
|
|
| T |
8834047 |
tctttaaccatggccggatacataccaat |
8834075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 8843573 - 8843347
Alignment:
| Q |
17 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
8843573 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgatataatttgaagaacttgagcacc |
8843474 |
T |
|
| Q |
117 |
ttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgac |
216 |
Q |
| |
|
|||| ||| || |||||||||||| |||||||| |||||| ||||||| ||||| | ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
8843473 |
ttgtcgaagatcatcaacatactttgcgagtaaagtgctggtttcatgttcttgcagactatgaatacaatcaagaaggtattgaataatatcatctgac |
8843374 |
T |
|
| Q |
217 |
tctttgaccatggcaggatacttacca |
243 |
Q |
| |
|
||||| |||| || |||||||||||| |
|
|
| T |
8843373 |
tctttcgccattgctggatacttacca |
8843347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 8514932 - 8514711
Alignment:
| Q |
17 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcacc |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8514932 |
aaataactatgaaacaatccaaattattatcccttctaaaaga-ctaatttatattccaagatttaaatattttgttataatttgaaaaacttgagcacc |
8514834 |
T |
|
| Q |
117 |
ttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgac |
216 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| |||| || | | ||| | |||||| ||||||| ||| | ||||||||| |||| |
|
|
| T |
8514833 |
ttgttgaaggttttcaacatactttgcgagtaaagggctggtttcatcttcatgtagactatcaatacattcaagaatgtatttcataatatcagctgaa |
8514734 |
T |
|
| Q |
217 |
tctttgaccatggcaggatactt |
239 |
Q |
| |
|
||||| ||||||| |||||||| |
|
|
| T |
8514733 |
tctttagccatggctggatactt |
8514711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 8527800 - 8527583
Alignment:
| Q |
21 |
aactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcaccttgt |
120 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
8527800 |
aactatgaaacaatccaaattattattccttctaaa-gaattaatttatttttcaagatttaaatattttgtgataatttgaaaaacttgagcactttgt |
8527702 |
T |
|
| Q |
121 |
tgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgactctt |
220 |
Q |
| |
|
||| |||||||||||| || ||||||||||||||| | ||||||| | ||| | |||||| ||||||| ||| | ||||||||| |||| |||| |
|
|
| T |
8527701 |
cgaagattttcaacatatgttgcgagtaaagggctggttttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctt |
8527602 |
T |
|
| Q |
221 |
tgaccatggcaggatactt |
239 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
8527601 |
tagccatggctggatactt |
8527583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 8540689 - 8540906
Alignment:
| Q |
21 |
aactatgaaacaatccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcaccttgt |
120 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
8540689 |
aactatgaaacaatccaaattattattccttctaaa-gaattaatttatttttcaagatttaaatattttgtgataatttgaaaaacttgagcactttgt |
8540787 |
T |
|
| Q |
121 |
tgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgactctt |
220 |
Q |
| |
|
||| |||||||||||| || ||||||||||||||| | ||||||| | ||| | |||||| ||||||| ||| | ||||||||| |||| |||| |
|
|
| T |
8540788 |
cgaagattttcaacatatgttgcgagtaaagggctggttttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctt |
8540887 |
T |
|
| Q |
221 |
tgaccatggcaggatactt |
239 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
8540888 |
tagccatggctggatactt |
8540906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 5083289 - 5083070
Alignment:
| Q |
17 |
aaataactatgaaacaatccaaatcattatcccttctaaaagaacta------atttattttccaagatttaaatattttgttataatttgaaaaacttg |
110 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5083289 |
aaataactatgaaataatccaaattaatatcccttctaaaaccactactagtaatttattttccaagatttaaatattttgtgataatttgaaaaacttg |
5083190 |
T |
|
| Q |
111 |
agcaccttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatca |
210 |
Q |
| |
|
|||||||||| | | |||||||||||||||| |||||||||||||| ||||||||| | ||| | |||||| ||||||| ||| | ||||||||| |
|
|
| T |
5083189 |
agcaccttgtcgtagattttcaacatactttgctagtaaagggctggtttcatgtttatgaagactatcaatacattcaagaatgtatttcataatatca |
5083090 |
T |
|
| Q |
211 |
actgactctttgaccatggc |
230 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
5083089 |
gctgactctttagccatggc |
5083070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 8647102 - 8647251
Alignment:
| Q |
48 |
ccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcaccttgttgaaaattttcaacatactttctgagt |
147 |
Q |
| |
|
|||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||| |||| |
|
|
| T |
8647102 |
ccttcttaaaaaactaagttatttttcaagatttaaatattttgttataatttgaagaacttgattaccttgttgaagaacatcaacatactttgggagt |
8647201 |
T |
|
| Q |
148 |
aaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggta |
197 |
Q |
| |
|
|||||||| || | || ||| |||||| | ||||||||||| |||||| |
|
|
| T |
8647202 |
aaagggctagttttatttttgcgcagactatcaatacaatcaaaaaggta |
8647251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 8625080 - 8625217
Alignment:
| Q |
28 |
aaacaatccaaatcattatcccttct--aaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcaccttgttgaaa |
125 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| || ||||||| |||||| | |||||||||||||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
8625080 |
aaacaatgcaaattattatcccttctcaaaaaaaattaatttactttccagcaattaaatattttgttataatttgaagaacttgaacaccttgtcgaag |
8625179 |
T |
|
| Q |
126 |
attttcaacatactttctgagtaaagggctggtatcat |
163 |
Q |
| |
|
|| |||||||||||| |||||||||||||| |||| |
|
|
| T |
8625180 |
atgatcaacatactttgcaagtaaagggctggtttcat |
8625217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 8549263 - 8549114
Alignment:
| Q |
15 |
tcaaataactatgaaacaatccaaatcattatcccttctaa-aagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagc |
113 |
Q |
| |
|
|||||||| || |||||||| ||| | |||||||||||| | || ||| || |||||||||| | |||||||||||||||| ||||||| ||||||| | |
|
|
| T |
8549263 |
tcaaataagtaagaaacaatgcaatttattatcccttctcataaaaacaaaattattttccagcaattaaatattttgttatgatttgaagaacttgaac |
8549164 |
T |
|
| Q |
114 |
accttgttgaaaattttcaacatactttctgagtaaagggctggtatcat |
163 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||| ||||| |||| |
|
|
| T |
8549163 |
accttgttgaagatgatcaacatactttgcaagtaaaggactggtttcat |
8549114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 8540100 - 8540248
Alignment:
| Q |
14 |
atcaaataactat--gaaacaatccaaatcattatcccttct--aaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaactt |
109 |
Q |
| |
|
||||||||||||| ||||||| ||| | || ||||||||| |||| |||||||||| |||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
8540100 |
atcaaataactataagaaacaaggcaatttatcatcccttctcaaaaaaaactaatttactttccagcaattaaatattttgttataatttgaagaactt |
8540199 |
T |
|
| Q |
110 |
gagcaccttgttgaaaattttcaacatactttctgagtaaagggctggt |
158 |
Q |
| |
|
|| |||||||| ||| || |||||||||||| |||||| ||||||| |
|
|
| T |
8540200 |
gaacaccttgtcgaagatgatcaacatactttgcaagtaaatggctggt |
8540248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 8507350 - 8507479
Alignment:
| Q |
34 |
tccaaatcattatcccttctaaaagaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcaccttgttgaaaattttcaa |
133 |
Q |
| |
|
||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||| ||||||||||| ||||||| || ||||| ||| || |||| |
|
|
| T |
8507350 |
tccaaatatttatcccttcctaaaaaactaattcattatccaagatttaaatattttagtataatttgaagaacttgatcatcttgtcgaagatcatcaa |
8507449 |
T |
|
| Q |
134 |
catactttctgagtaaagggctggtatcat |
163 |
Q |
| |
|
||| |||| |||||||||||||| |||| |
|
|
| T |
8507450 |
cattctttgcaagtaaagggctggtttcat |
8507479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 8832028 - 8832063
Alignment:
| Q |
186 |
atcaagaaggtaatgaataatatcaactgactcttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8832028 |
atcaagaaggtaatgaataatatcaactcactcttt |
8832063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 8630404 - 8630449
Alignment:
| Q |
64 |
atttattttccaagatttaaatattttgttataatttgaaaaactt |
109 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
8630404 |
atttatttttcaaaatttaaatattttgttatactttgaagaactt |
8630449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 34804 - 34583
Alignment:
| Q |
19 |
ataactatgaaacaatccaaatcattatcccttctaaa-agaactaatttattttccaagatttaaatattttgttataatttgaaaaacttgagcacct |
117 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||||| | || |||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
34804 |
ataaccatgaaacaatctaaattattatcccttctaaacaaaattaatttattttcagagatttaaatattttattataatttgaagaacttgatcacct |
34705 |
T |
|
| Q |
118 |
tgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatcaactgact |
217 |
Q |
| |
|
||| ||| || |||||||| ||| ||||||||||||||| ||||||||| |||| | |||||| ||||||||||| || ||||||||| |||| | |
|
|
| T |
34704 |
tgtcgaagatcatcaacatattttgcgagtaaagggctggtttcatgtttatgcaggctatcaatacattcaagaaggtattgcataatatcagctgaat |
34605 |
T |
|
| Q |
218 |
ctttgaccatggcaggatactt |
239 |
Q |
| |
|
|||| ||||||| | |||||| |
|
|
| T |
34604 |
ctttagccatggctgaatactt |
34583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 4539172 - 4538945
Alignment:
| Q |
17 |
aaataactatgaaacaatccaaa-tcattatcccttctaaaagaacta------atttattttccaagatttaaatattttgttataatttgaaaaactt |
109 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4539172 |
aaataactatgaaataatccaaaattattatcccttctaaaatcactactagtaatttatttttcaagatttaaatattttgtgataatttgaaaaactt |
4539073 |
T |
|
| Q |
110 |
gagcaccttgttgaaaattttcaacatactttctgagtaaagggctggtatcatgtttacgcagatcacgaatacaatcaagaaggtaatgaataatatc |
209 |
Q |
| |
|
|||||| |||| ||| |||||||| ||| || ||||||||||||| || | ||||||| | | | |||||||||||||| ||| | |||||||| |
|
|
| T |
4539072 |
gagcactttgtcgaagattttcaagatatgttgtgagtaaagggctagtttgatgtttatttaaactatcaatacaatcaagaatgtatttcataatatc |
4538973 |
T |
|
| Q |
210 |
aactgactctttgaccatggcaggatac |
237 |
Q |
| |
|
| | |||||||| ||||||| |||||| |
|
|
| T |
4538972 |
agccgactctttagccatggctggatac |
4538945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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