View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_88 (Length: 242)
Name: NF5110_low_88
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 6803292 - 6803148
Alignment:
| Q |
82 |
gtgcattatacaaaacacattaattttacatcacatgtgaaaattcttgaattcaatggcttcatag--cctactaaaaatgttatttcaattcataact |
179 |
Q |
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| T |
6803292 |
gtgcattatacaaaacacattcattctacattacatgtgcaaattcttgaatttgatgtcttcatataccctactaaaaatgttatttcaattcataact |
6803193 |
T |
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| Q |
180 |
gagttggttgcaatataggagtaaaggaaacaagagagttgatatg |
225 |
Q |
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| T |
6803192 |
gagttagatgcaatataggagt-aaggaaagaagagagttgatatg |
6803148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 7603201 - 7603317
Alignment:
| Q |
70 |
tttcttacatgagtgcattatacaaaacacattaattttacatcacatgtgaaaattcttgaattcaatggcttcatagcctactaaaaatgttatttca |
169 |
Q |
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| T |
7603201 |
tttctcacttgagtgcattgtacaaaacacattcattctacatcacatgcgcaaattcttgaattcgatgacttcatagccaattaaaaatgttatttca |
7603300 |
T |
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| Q |
170 |
attcataactgagttgg |
186 |
Q |
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| T |
7603301 |
attcataactgagttgg |
7603317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 8537860 - 8537724
Alignment:
| Q |
86 |
attatacaaaacaca--ttaattttacatcacatgtgaaaattcttgaattcaatggcttcata--gcctactaaaaatgttatttcaattcataactga |
181 |
Q |
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| T |
8537860 |
attatacaaaatacacgttcattttacatcacatttgcaaattcttgaattcgatggcttcatatagcctactgaaaatgttatttcaattcataactga |
8537761 |
T |
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| Q |
182 |
gttggttgcaatataggagtaaaggaaacaagagagttga |
221 |
Q |
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| T |
8537760 |
attggatggaatata--agt-aaggaaacaagagagttga |
8537724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 6465204 - 6465349
Alignment:
| Q |
74 |
ttacatgagtgcattatacaaaacacattaattttacatcacatgtgaaaattcttgaattcaatggcttcatagcctactaaaaatgttatttcaattc |
173 |
Q |
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| T |
6465204 |
ttacatgagtgcattaaacaaaacacattcattttacat-----gtgcacaatcttgaattcgatggcttcatagcctactaaaaaagttacttcgattc |
6465298 |
T |
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| Q |
174 |
ataactgagttggttgcaatataggagtaaaggaaacaagagagttgatatg |
225 |
Q |
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| T |
6465299 |
ataacagagttggattgaatataggagt-gaggaaacaattgagttgatatg |
6465349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 6753453 - 6753373
Alignment:
| Q |
144 |
catagcctactaaaaatgttatttcaattcataactgagttggttgcaatataggagtaaaggaaacaagagagttgatatg |
225 |
Q |
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| T |
6753453 |
catagcctactaaaaatgttatttcaattcataaataagttggatacaatataggagt-aaggaaacaagagagttgatatg |
6753373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9720956 - 9720903
Alignment:
| Q |
1 |
ttgtacctgactcgaaatatgatgtctctgcggtccctaattaaaagcttgaca |
54 |
Q |
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| T |
9720956 |
ttgtacctgactcgaaatatgatgtctctgcggtcactaattaaaagcgtgaca |
9720903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 6791314 - 6791259
Alignment:
| Q |
122 |
aaattcttgaattcaatggcttcatagcctactaaaaatgttatttcaattcataa |
177 |
Q |
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| T |
6791314 |
aaattgttgaattcaatgacttaatagcctattaaaaacgttacttcaattcataa |
6791259 |
T |
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