View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_91 (Length: 240)
Name: NF5110_low_91
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_91 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30748971 - 30749192
Alignment:
| Q |
1 |
tgagcttatctactggtataagccaatttgagactgttggagagaacttatgaaaacaatctataacatgtccattagcatgtatatcttatatgatagc |
100 |
Q |
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| T |
30748971 |
tgagcttatctactgacataagccaatgtgagactgtttgagagaacttatgaaaacaatctataacatgtccattagcacgtatatcttatatgatagc |
30749070 |
T |
|
| Q |
101 |
attttgactttattttctagcactgtgataaacgtaagcatttatatgataaaaacttgattaagttgtttattcaaataaggccttactcaccatgtgg |
200 |
Q |
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| T |
30749071 |
attttgactttattttctagcactgtgataaacgtaaacatttatatgataaacacttgattaagttgtttattcaaataaggccttactcaccatgtgg |
30749170 |
T |
|
| Q |
201 |
gaagtgtctgcttggttatgcg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30749171 |
gaagtgtctgcttggttatgcg |
30749192 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 32837453 - 32837378
Alignment:
| Q |
4 |
gcttatctactggtataagccaatttgagactgttggagagaacttatgaaaacaatctataacatgtccattagc |
79 |
Q |
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| T |
32837453 |
gcttatctagtggtataagtacttgtgagactgtttgggagaacttatgaaaacagcttataacatgtccattagc |
32837378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28803467 - 28803541
Alignment:
| Q |
1 |
tgagcttatctactggtataagccaatttgagactgttggagagaacttatgaaaacaatctataacatgtccat |
75 |
Q |
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| T |
28803467 |
tgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccat |
28803541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 39137609 - 39137568
Alignment:
| Q |
30 |
gagactgttggagagaacttatgaaaacaatctataacatgt |
71 |
Q |
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| T |
39137609 |
gagactgtcagagagaacttatgaaaacaatttataacatgt |
39137568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 2996680 - 2996632
Alignment:
| Q |
27 |
tttgagactgttggagagaacttatgaaaacaatctataacatgtccat |
75 |
Q |
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| T |
2996680 |
tttgagactgtttgagagagcttatgaaaacaacttatgacatgtccat |
2996632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 25185934 - 25185889
Alignment:
| Q |
135 |
taagcatttatatgataaaaacttgattaagttgtttattcaaata |
180 |
Q |
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| T |
25185934 |
taagcacttatatgataaacacttaattaagttgtttatccaaata |
25185889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 31064723 - 31064687
Alignment:
| Q |
41 |
agagaacttatgaaaacaatctataacatgtccatta |
77 |
Q |
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| T |
31064723 |
agagaacttatgaaaataatttataacatgtccatta |
31064687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 4511159 - 4511103
Alignment:
| Q |
3 |
agcttatctactggtataagccaatttgagactgttggagagaacttatgaaaacaa |
59 |
Q |
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||||||||||||||||||||| | ||||||| || || ||||||||||||||||| |
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| T |
4511159 |
agcttatctactggtataagcacttgtgagactattcgaaagaacttatgaaaacaa |
4511103 |
T |
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