View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_92 (Length: 239)
Name: NF5110_low_92
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10106548 - 10106776
Alignment:
| Q |
1 |
cataagaatatgaatcatattcataatttaatacacaacaacaatataaaccaatcctctaaagaattgttatgataaataagcatattgtaatttcatt |
100 |
Q |
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| T |
10106548 |
cataagaatatgaatcatattcataatttaatacacaacaacaatataaaccaatcctctaaagaattgttatgataaataagcatattgtaatttcatt |
10106647 |
T |
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| Q |
101 |
gttgataaatttagaaaagaagtccaaagacaagagcaacaaaggaagcaattatagttggaacaaagagagtagtagcatctgatgttggacttggagc |
200 |
Q |
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| T |
10106648 |
gttgataaatttagaaaagaagtccaaaaagaagagcaacaaaggaagcaattatagttggaacaaagagagtagtagcatctgatgtaggacttggagc |
10106747 |
T |
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| Q |
201 |
tggtgcatctgcagctgaaacacttgatg |
229 |
Q |
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| T |
10106748 |
tggtgcatctgcagctgaaacacttgatg |
10106776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 10068877 - 10069018
Alignment:
| Q |
88 |
ttgtaatttcattgttgataaatttagaaaagaagtccaaagacaagagcaacaaaggaagcaattatagttggaacaaagagagtagtagcatctgatg |
187 |
Q |
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| T |
10068877 |
ttgtaatttcattgttgataaatttagaaaagaagtccaaagacaagagcaacaaaggaagcaattattgttgggacaaagagagtagtagcatctgatg |
10068976 |
T |
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| Q |
188 |
ttggacttggagctggtgcatctgcagctgaaacacttgatg |
229 |
Q |
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| T |
10068977 |
ttggacttggagctggtgcatctgcagctgaaacacttgatg |
10069018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 33252975 - 33252908
Alignment:
| Q |
156 |
agttggaacaaagagagtagtagcatctgatgttggacttggagctggtgcatctgcagctgaaacac |
223 |
Q |
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| T |
33252975 |
agttggaacaaaaagtgtggtagcatcagaagttggacttggagctggtgcatcagcagctgaaacac |
33252908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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