View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_97 (Length: 238)
Name: NF5110_low_97
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_97 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13653016 - 13653233
Alignment:
| Q |
1 |
tcatttagacttaaagcagtgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgataatttag |
100 |
Q |
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| T |
13653016 |
tcatttagactgaaagcagtgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttag |
13653115 |
T |
|
| Q |
101 |
acaaatttggttgtgatttatacatagttggacaagggcatcatagaaatgttcgagtcttttcgaatttattggaatggtgtgattgtccagaacttgg |
200 |
Q |
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| T |
13653116 |
acaaatttggttgtgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttgg |
13653215 |
T |
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| Q |
201 |
agttataggggatatgtt |
218 |
Q |
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|||||| ||||||||||| |
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| T |
13653216 |
agttatcggggatatgtt |
13653233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13660516 - 13660733
Alignment:
| Q |
1 |
tcatttagacttaaagcagtgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgataatttag |
100 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||||| || |||||| |
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| T |
13660516 |
tcatttagactgaaagcagtgaataacaatgattctatatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttag |
13660615 |
T |
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| Q |
101 |
acaaatttggttgtgatttatacatagttggacaagggcatcatagaaatgttcgagtcttttcgaatttattggaatggtgtgattgtccagaacttgg |
200 |
Q |
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| T |
13660616 |
acaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttgg |
13660715 |
T |
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| Q |
201 |
agttataggggatatgtt |
218 |
Q |
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| T |
13660716 |
agttatcggggatatgtt |
13660733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 437740 - 437548
Alignment:
| Q |
20 |
tgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgataatttagacaaatttggttgtgattt |
119 |
Q |
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|||| |||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||| ||| || | |||| || ||| ||| |||| |
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| T |
437740 |
tgaacaacaatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaaaatttttattgcaattt |
437641 |
T |
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| Q |
120 |
atacatagttggacaagggcatcatagaaatgttcgagtcttttcgaatttattggaatggtgtgattgtccagaacttggagttatagggga |
212 |
Q |
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| T |
437640 |
atatatagttggacaagggaatcgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttagggga |
437548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 28609164 - 28609359
Alignment:
| Q |
20 |
tgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgataatttagacaaatttggttgtgattt |
119 |
Q |
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|||| |||||||||| |||||| |||||||| |||||||||||||| | |||||||||||||||| ||| || | |||| ||| ||||||| ||||| |
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| T |
28609164 |
tgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgattt |
28609263 |
T |
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| Q |
120 |
atacatagttggacaagggcatcatagaaatgttcgagtcttttcgaatttattggaatggtgtgattgtccagaacttggagttataggggatat |
215 |
Q |
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||||||||||||||| || ||| ||| || ||||||||||| || ||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
28609264 |
atacatagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatat |
28609359 |
T |
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