View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_98 (Length: 237)

Name: NF5110_low_98
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_98
NF5110_low_98
[»] chr2 (2 HSPs)
chr2 (1-227)||(3280426-3280652)
chr2 (1-95)||(17992536-17992630)
[»] chr6 (58 HSPs)
chr6 (1-221)||(28097638-28097858)
chr6 (1-190)||(29843213-29843402)
chr6 (1-230)||(28296926-28297155)
chr6 (1-230)||(28514918-28515147)
chr6 (1-212)||(28243562-28243773)
chr6 (1-230)||(28235332-28235561)
chr6 (2-191)||(26656733-26656922)
chr6 (2-191)||(26762704-26762893)
chr6 (2-84)||(26143636-26143718)
chr6 (1-195)||(29826753-29826947)
chr6 (15-111)||(26950524-26950620)
chr6 (2-86)||(27705734-27705818)
chr6 (7-230)||(28181890-28182114)
chr6 (2-77)||(25580490-25580565)
chr6 (2-191)||(26862348-26862537)
chr6 (1-230)||(28227719-28227948)
chr6 (1-230)||(28326245-28326474)
chr6 (1-230)||(28503881-28504110)
chr6 (7-86)||(26803219-26803298)
chr6 (1-196)||(28140302-28140497)
chr6 (2-84)||(25483827-25483909)
chr6 (2-84)||(25539311-25539393)
chr6 (2-75)||(27697927-27698000)
chr6 (2-86)||(26624039-26624123)
chr6 (15-111)||(26636427-26636523)
chr6 (2-86)||(26730016-26730100)
chr6 (15-111)||(26742393-26742489)
chr6 (15-111)||(26975732-26975828)
chr6 (2-86)||(27337425-27337509)
chr6 (2-86)||(27398165-27398249)
chr6 (20-195)||(26647265-26647440)
chr6 (20-195)||(26753233-26753408)
chr6 (2-84)||(25511660-25511742)
chr6 (2-84)||(26056690-26056772)
chr6 (2-84)||(26076660-26076742)
chr6 (1-85)||(25074634-25074718)
chr6 (2-62)||(26884838-26884898)
chr6 (55-230)||(26892776-26892951)
chr6 (127-195)||(27530522-27530590)
chr6 (2-86)||(27604034-27604118)
chr6 (143-230)||(26884979-26885066)
chr6 (14-84)||(26724348-26724418)
chr6 (15-117)||(26959907-26960009)
chr6 (2-84)||(27610452-27610534)
chr6 (2-84)||(27717831-27717913)
chr6 (15-84)||(26849493-26849562)
chr6 (2-63)||(27426965-27427026)
chr6 (2-195)||(31285327-31285520)
chr6 (7-107)||(28186166-28186266)
chr6 (2-86)||(28781869-28781953)
chr6 (2-96)||(26937797-26937891)
chr6 (2-76)||(27530641-27530715)
chr6 (14-79)||(26618420-26618485)
chr6 (2-86)||(28787006-28787090)
chr6 (20-84)||(26812314-26812378)
chr6 (2-86)||(27676950-27677034)
chr6 (22-86)||(27679738-27679802)
chr6 (2-86)||(28793127-28793211)
[»] chr5 (1 HSPs)
chr5 (1-230)||(16691634-16691863)
[»] scaffold0038 (3 HSPs)
scaffold0038 (1-212)||(43724-43935)
scaffold0038 (1-230)||(35494-35723)
scaffold0038 (1-230)||(28217-28446)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-230)||(57480-57709)
[»] chr4 (7 HSPs)
chr4 (15-197)||(5090169-5090354)
chr4 (7-86)||(18678886-18678965)
chr4 (2-63)||(18074529-18074590)
chr4 (2-86)||(18698726-18698810)
chr4 (20-86)||(18730830-18730896)
chr4 (32-84)||(18654805-18654857)
chr4 (2-86)||(18723411-18723495)
[»] chr1 (5 HSPs)
chr1 (2-231)||(28126860-28127089)
chr1 (2-86)||(267670-267754)
chr1 (14-197)||(26136668-26136851)
chr1 (128-231)||(28163561-28163664)
chr1 (2-84)||(28163707-28163789)
[»] scaffold0349 (1 HSPs)
scaffold0349 (2-86)||(2869-2953)
[»] chr8 (2 HSPs)
chr8 (2-86)||(29273168-29273252)
chr8 (169-230)||(16440991-16441052)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-63)||(60337-60398)
[»] scaffold0419 (1 HSPs)
scaffold0419 (2-86)||(8255-8339)
[»] scaffold0277 (2 HSPs)
scaffold0277 (2-86)||(4042-4126)
scaffold0277 (2-86)||(13005-13089)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3280426 - 3280652
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280426 acaactcttgcaagagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 3280525  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280526 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 3280625  T
Q  201 gaaaaaggttctattggttcttgatga 227  Q
    |||||||||||||||||||||||||||    
T  3280626 gaaaaaggttctattggttcttgatga 3280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17992630 - 17992536
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatgg 95  Q
    |||||||||||   ||||||||||||||| |||||| |||||||| |||||   ||||| |||||||||||||||||||||||||  ||||||||    
T  17992630 acaactcttgctcaagcagtttataatttggttgctaatcaatttcaatgtaagtgtttccttcacaatgtgagagaaaattcagtcaaacatgg 17992536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28097858 - 28097638
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| ||||||| ||| |||||||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||  |||    
T  28097858 acaacacttgcaaaagcggtttataatttcattgctggtcaatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatggcttag 28097759  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |     
T  28097758 agcatctccaaaaagatttgctttccaagattgttggattggacattaagttagcagatactagtgagggaattccaatcataaaacaaaggctacaaca 28097659  T
Q  201 gaaaaaggttctattggttct 221  Q
     || |||||||||||| ||||    
T  28097658 aaagaaggttctattgattct 28097638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 29843402 - 29843213
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||  ||||| ||||||||||  |||||||| ||||||||||| | |||||||||||| | | |||||||| |||||| ||||||||  |||    
T  29843402 acaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaaagttcagctaaacatggcttag 29843303  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaa 190  Q
    ||||||||||| || |  ||||||||||||| ||||  |||||||||||| ||||||||  || ||| ||||||||||| ||||||||||    
T  29843302 agcatctccaagagaagcttctttccaaaacagttgatttggacattaagctaggagatgttaatgaaggaattccaataataaagcaaa 29843213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28297155 - 28296926
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| ||||| |||||||||||||||| | | || |||||||||||  || | ||||||||||||||||| || ||||||||||| ||| ||||| |||    
T  28297155 acaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaatatggtttag 28297056  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||  |  |  | |||||||||   |||| ||||||| ||||||||||||||   |  ||||||||||||||||||||||||||||| |||||    
T  28297055 agcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataaagcaaaggcttcaccg 28296956  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||| | ||| |||| ||||||||    
T  28296955 aaagaaggttttgttgattctagatgatgt 28296926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28514918 - 28515147
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| ||||| |||||||||||||||| | | || |||||||||||  || | ||||||||||||||||| || ||||||||||| ||| ||||| |||    
T  28514918 acaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaatatggtttag 28515017  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||  |  |  | |||||||||   |||| ||||||| ||||||||||||||   |  ||||||||||||||||||||||||||||| |||||    
T  28515018 agcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataaagcaaaggcttcaccg 28515117  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||| | ||| |||| ||||||||    
T  28515118 aaagaaggttttgttgattctagatgatgt 28515147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28243562 - 28243773
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||||||||||||||||| | | |||||||||||||| ||| |||||||||||||| |||| || ||||||||| | ||| ||||| |||    
T  28243562 acaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattcaactaaatatggtttag 28243661  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||  |  |  | |||||||||   |||| |||||||||| |||| |||||||  |  |||||||||||||| |||||| ||||||| |||||    
T  28243662 agcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataataaagaaaaggcttcaccg 28243761  T
Q  201 gaaaaaggttct 212  Q
     || ||||||||    
T  28243762 aaacaaggttct 28243773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28235332 - 28235561
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||||||||||||||||| | | ||||||||||||||  || | |||||||||||| | || || ||||||||| | ||| ||||| |||    
T  28235332 acaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttag 28235431  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||     |  | |||||||||   |||| ||||||| || |||||||||||   | |||||||||||||||||||||||||||||| |||||    
T  28235432 agcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccg 28235531  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||||| ||| |||| ||||||||    
T  28235532 aaagaaggttctgttgattctagatgatgt 28235561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 26656733 - 26656922
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctaga 101  Q
    |||| ||||| | |||| |||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||  |  ||  | |  |    
T  26656733 caacacttgccaaagcaatttataattttgtcgctgatcaatttgaaggtgtatgttttcttcacaatgtcagagagaattcagctcataataatttgaa 26656832  T
Q  102 gcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaag 191  Q
     ||||||||  ||||  | ||||| ||||||||| || || | |||||||||||||||  ||||||||||||||||||||||||| ||||    
T  26656833 acatctccaggaggagctcctttcaaaaactgttagagtgaatattaagttaggagatgttagtgagggaattccaatcataaaggaaag 26656922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 26762704 - 26762893
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctaga 101  Q
    |||| ||||| | |||| |||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||  |  ||  | |  |    
T  26762704 caacacttgccaaagcaatttataattttgtcgctgatcaatttgaaggtgtatgttttcttcacaatgtcagagagaattcagctcataataatttgaa 26762803  T
Q  102 gcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaag 191  Q
     ||||||||  ||||  | ||||| ||||||||| || || | |||||||||||||||  ||||||||||||||||||||||||| ||||    
T  26762804 acatctccaggaggagctcctttcaaaaactgttagagtgaatattaagttaggagatgttagtgagggaattccaatcataaaggaaag 26762893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 26143636 - 26143718
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  26143636 caacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26143718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 29826753 - 29826947
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||  ||||| |||||||| |  ||| |||| ||||||||||  | |||||||||||  |  ||||||||| |||||| ||||||||  |||    
T  29826753 acaacacttgctcgagcaatttataatatgattggtgataaatttgaatgcttgtgttttcttcatgacttgagagaaagttcagctaaacatggcttag 29826852  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 195  Q
    | ||||||||| || |  ||||||||||||| |||| |||||||| |||| ||||||||  ||  || ||||||||||| |||||||||||||||    
T  29826853 aacatctccaacagaagcttctttccaaaacagttgaattggacactaagctaggagatgttaacgaaggaattccaataataaagcaaaggcta 29826947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 26950524 - 26950620
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaa 111  Q
    |||||||||||| ||  ||||| |||||||||||||   |||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||    
T  26950524 agcagtttataacttgattgctaatcaatttgaatgcaaatgttttcttcacaatgtgagagaaaattcagtaaaacatggcttagagtatctccaa 26950620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 27705818 - 27705734
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  27705818 caacacttgcaagagcaatttataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 27705734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 28181890 - 28182114
Alignment:
Q  7 cttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatc 106  Q
    |||||||||||||||||||||| | | ||||||||||||||  || | ||||||||| || |  | || | ||||||||| ||| ||||| |||||||||    
T  28181890 cttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttaacgacataagggcaaattcagctaaatatggtttagagcatc 28181989  T
Q  107 tccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaa-gcaaaggctacaccggaaaa 205  Q
    | ||  |  || | |||||||||   | || ||||||| ||||||||||||||   |  ||||||| |||||||||||| ||||||||| ||||| || |    
T  28181990 tacaggaaaatctcctttccaaattagctgaattggacgttaagttaggagatgtcaacgagggaactccaatcataaaagcaaaggcttcaccgaaaga 28182089  T
Q  206 aggttctattggttcttgatgatgt 230  Q
    ||||||||||| |||| ||||||||    
T  28182090 aggttctattgattctagatgatgt 28182114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 25580490 - 25580565
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagaga 77  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||    
T  25580490 caacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttcataatgtcagaga 25580565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 26862348 - 26862537
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctaga 101  Q
    |||| ||||||| |||| |||||||||| ||||| |||||||||||| |||||||||||||||| || || ||||| |||||| |  |  || |  |  |    
T  26862348 caacacttgcaaaagcaatttataattttgttgccgatcaatttgaaggtgtatgttttcttcataaagttagagagaattcaactcataatagcttgaa 26862447  T
Q  102 gcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaag 191  Q
     |||||||| |||||  ||||||  ||||| |||  |||| |||||||||||||||||  |||||||||||||||| | |||||| ||||    
T  26862448 acatctccagaaggagcttcttttaaaaacagttaaattgaacattaagttaggagatgctagtgagggaattccacttataaaggaaag 26862537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28227719 - 28227948
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||| ||||||||||||||  | || |||||||||||  || | |||||||||||| |||| || ||||||||||| ||| ||||| |||    
T  28227719 acaacacttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttag 28227818  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    |||||||  |     |  | |||||||||   |||| ||||||  ||||||||||||||   |  |||||||||||| || ||||||||||||| |||||    
T  28227819 agcatctataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagcaaaggcttcaccg 28227918  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || || ||||||||| |||| ||||||||    
T  28227919 aaagaaagttctattgattctcgatgatgt 28227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28326245 - 28326474
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||||||||||||||||| | | || |||||||||||  || | ||||||||| || |  | || | ||||||||| ||| ||||| |||    
T  28326245 acaacacttgcaagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttag 28326344  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||  |  |  | |||||||||   |||| |||| || ||||||||||||||   | ||| ||| |||||||||||||||||||||| |||||    
T  28326345 agcatctacaggaaaagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagcaaaggcttcaccg 28326444  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||||| ||| |||| ||||||||    
T  28326445 aaagaaggttctgttgattctcgatgatgt 28326474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28503881 - 28504110
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||||||||||||||||| | | || |||||||||||  || | ||||||||| || |  | || | ||||||||| ||| ||||| |||    
T  28503881 acaacacttgcaagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttag 28503980  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||  |  |  | |||||||||   |||| |||| || ||||||||||||||   | ||| ||| |||||||||||||||||||||| |||||    
T  28503981 agcatctacaggaaaagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagcaaaggcttcaccg 28504080  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||||| ||| |||| ||||||||    
T  28504081 aaagaaggttctgttgattctcgatgatgt 28504110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 26803219 - 26803298
Alignment:
Q  7 cttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  26803219 cttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 26803298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28140302 - 28140497
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| ||||||  |||| ||||||||||  |||| ||||||||||||||| | ||||||||||| ||||||||||||| |||||| ||||||||  |||    
T  28140302 acaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacatggcttag 28140401  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctac 196  Q
    |  |||||||| |  |  | ||||| ||||| ||||| |||  | ||||||| ||| ||   ||||| ||||| ||||| |||||| |||||||||    
T  28140402 aagatctccaagaaaaactcctttctaaaacagttggtttgagcgttaagtttggacatgtaagtgaaggaataccaataataaaggaaaggctac 28140497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 25483827 - 25483909
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||||||| ||||||  ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  25483827 caacacttgcaaaagcagtttttaattttcttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 25483909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 25539311 - 25539393
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||||||| |||||| ||||||||||||||||||  ||||||||||||||| ||||| ||||| ||||||    
T  25539311 caacacttgcaaaagcagtttttaattttgttgctgatcaatttgaagttgtatgttttcttcataatgtcagagagaattca 25539393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 27698000 - 27697927
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgaga 75  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || ||||||||||||| |||||||||    
T  27698000 caacacttgcaagagcaatctataatttggttgctgatcaatttgaaggtttatgttttcttcataatgtgaga 27697927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 26624039 - 26624123
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||||||||||| | ||||| || |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  26624039 caacacttgcaagagcaatctataactttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 26624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 26636427 - 26636523
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaa 111  Q
    |||| ||||||||||  || || |||||||||||||| | ||||| |||||||||||||||||||||||||  ||||||||  ||||| ||||||||    
T  26636427 agcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtatctccaa 26636523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 26730016 - 26730100
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||||||||||| | ||||| || |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  26730016 caacacttgcaagagcaatctataactttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 26730100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 26742393 - 26742489
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaa 111  Q
    |||| ||||||||||  || || |||||||||||||| | ||||| |||||||||||||||||||||||||  ||||||||  ||||| ||||||||    
T  26742393 agcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtatctccaa 26742489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 26975732 - 26975828
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaa 111  Q
    |||||||||||||||  ||||| ||||||||||||||   ||||| |||||| ||||||||||||||||||  ||||||||  ||||| ||||||||    
T  26975732 agcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattcagttaaacatggcttagagtatctccaa 26975828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 27337509 - 27337425
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||| | ||||| |||||||| ||||| ||||| ||||||||    
T  27337509 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggagtatgctttcttcataatgttagagagaattcagc 27337425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 27398249 - 27398165
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||| | ||||| |||||||| ||||| ||||| ||||||||    
T  27398249 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggagtatgctttcttcataatgttagagagaattcagc 27398165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 26647265 - 26647440
Alignment:
Q  20 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattt 119  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||  |  ||    |  | |||||||| |||||  |    
T  26647265 tttataattttgttgctgatcaatttgaaggtgtatgctttcttcataatgtcagagagaattcagctcataataacttgaaacatctccagaaggagct 26647364  T
Q  120 tctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 195  Q
     ||||| ||||| |||  | || |||||||||| ||| ||| | ||||||||||||||||||| ||| ||||||||    
T  26647365 cctttcaaaaacagttaaagtgaacattaagtttggacatatttgtgagggaattccaatcattaaggaaaggcta 26647440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 26753233 - 26753408
Alignment:
Q  20 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattt 119  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||  |  ||    |  | |||||||| |||||  |    
T  26753233 tttataattttgttgctgatcaatttgaaggtgtatgctttcttcataatgtcagagagaattcagctcataataacttgaaacatctccagaaggagct 26753332  T
Q  120 tctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 195  Q
     ||||| ||||| |||  | || |||||||||| ||| ||| | ||||||||||||||||||| ||| ||||||||    
T  26753333 cctttcaaaaacagttaaagtgaacattaagtttggacatatttgtgagggaattccaatcattaaggaaaggcta 26753408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 25511660 - 25511742
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||||||| |||||   ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  25511660 caacacttgcaaaagcagtttttaattctattgctgatcaatttgaaagtgtatgttttcttcataatgtcagagagaattca 25511742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 26056690 - 26056772
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||||||| |||||   ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  26056690 caacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 26076660 - 26076742
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||||||| |||||   ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  26076660 caacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26076742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25074634 - 25074718
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcag 85  Q
    |||||||||||   |||| ||||||||||  ||||| ||||||||||||||   ||||| |||||||||||||||||||||||||    
T  25074634 acaactcttgctcaagcaatttataatttgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcag 25074718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 26884838 - 26884898
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttct 62  Q
    |||| ||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||    
T  26884838 caacacttgcaaaagcaatttataattatgttgctgatcaatttgaatgtgtatgttttct 26884898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 26892951 - 26892776
Alignment:
Q  55 tgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttag 154  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||||  | |||||| || |  | || || |||||  |||||||| | |||| |||||    
T  26892951 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 26892852  T
Q  155 gagatagtag-tgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 230  Q
    ||||| || | ||| |||||| ||||||||||  | |||||||| || |||| ||||||||||||| | ||||||||    
T  26892851 gagat-gtggatgaaggaatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgt 26892776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 27530590 - 27530522
Alignment:
Q  127 aaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 195  Q
    ||||| ||| ||||||||||||||||||||| |  |||| |||||||||||||||| ||||||||||||    
T  27530590 aaaacagttagattggacattaagttaggaggtgttagtcagggaattccaatcattaagcaaaggcta 27530522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 27604118 - 27604034
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  27604118 caacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 27604034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 26884979 - 26885066
Alignment:
Q  143 acattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 230  Q
    |||||||||||||||||  |||||||||||||||| |||||||| |||| |||||  | || ||| |||| ||| |||||||||||||    
T  26884979 acattaagttaggagatgttagtgagggaattccactcataaaggaaagactacatagaaagaagattcttttgattcttgatgatgt 26885066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 26724348 - 26724418
Alignment:
Q  14 gagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    ||||||||||| ||||  ||||||||||||||||| |  | ||||| ||||||||||||||||||||||||    
T  26724348 gagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaaattca 26724418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 26959907 - 26960009
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaag 114  Q
    ||||||||||||||   ||| | |||||||||||| |   ||||| |||||||||||||||||||||||||  ||||||||  ||||| |||||||| ||    
T  26959907 agcagtttataattcgattgttcatcaatttgaatttaagtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtatctccaagag 26960006  T
Q  115 gat 117  Q
    |||    
T  26960007 gat 26960009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 27610534 - 27610452
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||    
T  27610534 caacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattca 27610452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 27717913 - 27717831
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||    
T  27717913 caacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattca 27717831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 26849493 - 26849562
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    ||||||||||||||   ||||||||||||||||||||   ||||| |||||| |||||||||||||||||    
T  26849493 agcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaattca 26849562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 27427026 - 27426965
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttctt 63  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||    
T  27427026 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 27426965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 31285327 - 31285520
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctaga 101  Q
    |||| |||||||||||| | ||||||||  ||| ||||||||||||  |  |||||||||||||  |||||||||| |||||||| ||| ||    |  |    
T  31285327 caacacttgcaagagcaatctataattttattggtgatcaatttgacggattatgttttcttcatgatgtgagagagaattcagctaaaaataacttgaa 31285426  T
Q  102 gcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 195  Q
     ||||||||| || |  | ||||  |||||  |||||||||| ||||||||||   ||  ||||||||||||||||||||| ||| ||||||||    
T  31285427 acatctccaagagaagctccttttgaaaacaattggattggaaattaagttagaccatgttagtgagggaattccaatcattaaggaaaggcta 31285520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 28186166 - 28186266
Alignment:
Q  7 cttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatc 106  Q
    |||||||||||||||||||||| | | ||||||||||||||   | | |||||||||||| |||| || | ||||||||| ||| ||||| | |||||||    
T  28186166 cttgcaagagcagtttataattccctagctgatcaatttgatgatttgtgttttcttcacgatgtaaggggaaattcagctaaatatggtttggagcatc 28186265  T
Q  107 t 107  Q
    |    
T  28186266 t 28186266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 28781869 - 28781953
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||| || |||||||||||| ||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  28781869 caacacttgtaaaagcagtttataacttaattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 28781953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 26937797 - 26937891
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggt 96  Q
    |||| |||||| ||||| ||||||||||  ||| ||||||||||||| || | ||||||||||| |||||  |||||||| || | |||||||||    
T  26937797 caacacttgcacgagcaatttataatttgattggtgatcaatttgaaagtttgtgttttcttcataatgtacgagaaaatgcaactaaacatggt 26937891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 27530715 - 27530641
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagag 76  Q
    |||| ||||||| |||| ||||||||||| |||||||||||||||||  | ||||||||||  | ||||||||||    
T  27530715 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaagttttatgttttctagaaaatgtgagag 27530641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 26618420 - 26618485
Alignment:
Q  14 gagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaa 79  Q
    ||||||||||| ||||  ||||||||||||||||| |  | ||||| |||||||||||||||||||    
T  26618420 gagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaa 26618485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 28787006 - 28787090
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  28787006 caacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 28787090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 26812314 - 26812378
Alignment:
Q  20 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    ||||||||||  ||||||||||||||||  || | ||||| ||||||| |||| |||||||||||    
T  26812314 tttataatttgattgctgatcaatttgatggtttgtgtttccttcacagtgtgcgagaaaattca 26812378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 27677034 - 27676950
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||| | |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||| ||| | ||||||    
T  27677034 caacacttgcgaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgaaagagagttcagc 27676950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 27679738 - 27679802
Alignment:
Q  22 tataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||||||| ||||| |||||||| ||| ||  ||||||||||||  |||||||||| ||||||||    
T  27679738 tataattttgttgcagatcaattcgaaggttcatgttttcttcatgatgtgagagagaattcagc 27679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 28793127 - 28793211
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| | ||||||    
T  28793127 caacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagagttcagc 28793211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16691634 - 16691863
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||  ||||| ||||||||||  |||||||||||||||||||| | |||||||||||  | ||||||||||||||| | ||||||||  |||    
T  16691634 acaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaaaattcatctaaacatggcttag 16691733  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    | ||||| ||| |     | |||||||||||  ||||||| ||||||||||||||| ||  |||||| ||||||||||| ||||| ||||||||||| |     
T  16691734 aacatcttcaagaaaggctcctttccaaaaccattggattagacattaagttaggacatgttagtgaaggaattccaataataaaacaaaggctacaaca 16691833  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     ||||||||||| ||| |||| ||||||||    
T  16691834 aaaaaaggttcttttgattctcgatgatgt 16691863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 43724 - 43935
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||||||||||||||||| | | |||||||||||||| ||| |||||||||||||| |||| || ||||||||| | ||| ||||| |||    
T  43724 acaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattcaactaaatatggtttag 43823  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||  |  |  | |||||||||   |||| |||||||||| |||| |||||||  |  |||||||||||||| |||||| ||||||| |||||    
T  43824 agcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataataaagaaaaggcttcaccg 43923  T
Q  201 gaaaaaggttct 212  Q
     || ||||||||    
T  43924 aaacaaggttct 43935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35494 - 35723
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||||||||||||||||| | | ||||||||||||||  || | |||||||||||| | || || ||||||||| | ||| ||||| |||    
T  35494 acaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttag 35593  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||     |  | |||||||||   |||| ||||||| || |||||||||||   | |||||||||||||||||||||||||||||| |||||    
T  35594 agcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccg 35693  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||||| ||| |||| ||||||||    
T  35694 aaagaaggttctgttgattctagatgatgt 35723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28217 - 28446
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| |||||||| ||||||||||||||  | || |||||||||||  || | |||||||||||| |||| || ||||||||||| ||| ||||| |||    
T  28217 acaacacttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttag 28316  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    |||||||  |     |  | |||||||||   |||| ||||||  ||||||||||||||   |  |||||||||||| || ||||||||||||| |||||    
T  28317 agcatctataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagcaaaggcttcaccg 28416  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || || ||||||||| |||| ||||||||    
T  28417 aaagaaagttctattgattctcgatgatgt 28446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 57709 - 57480
Alignment:
Q  1 acaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctag 100  Q
    ||||| ||||| |||||||||| ||||| | | || |||||||||||   | | |||||||||||| | || || ||||||||||| ||| ||||| |||    
T  57709 acaacacttgctagagcagtttttaattccatagccgatcaatttgatgatttgtgttttcttcacgacgtaagggaaaattcagctaaatatggtttag 57610  T
Q  101 agcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccg 200  Q
    ||||||| ||     |  |||||||||||   |||| ||||||||||||||||| ||||   |  ||||||||||||||||||||||||||||| |||||    
T  57609 agcatctgcagggaaaacttctttccaaattagttgaattggacattaagttagtagatgtcaacgagggaattccaatcataaagcaaaggcttcaccg 57510  T
Q  201 gaaaaaggttctattggttcttgatgatgt 230  Q
     || |||||| | ||| |||| ||||||||    
T  57509 aaagaaggttttgttgattctcgatgatgt 57480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 5090354 - 5090169
Alignment:
Q  15 agcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaa---catggtctagagcatctccaa 111  Q
    |||| |||| |||||| ||||| |||||||||||||| | |||||||||| ||||||||||||||||||| | |||    ||||| ||||| |||| ||     
T  5090354 agcaatttacaatttcattgctcatcaatttgaatgtctttgttttcttcccaatgtgagagaaaattcaactaaagtggatggtttagagtatcttcag 5090255  T
Q  112 aaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctaca 197  Q
    |   |  | ||||  |||||  |||||||||| |||| ||| |||||||  |||||||||||||||||||||||| ||||||||||    
T  5090254 agtaaggtcctttttaaaacaattggattggaaattaggtttggagatatcagtgagggaattccaatcataaagaaaaggctaca 5090169  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 18678965 - 18678886
Alignment:
Q  7 cttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  18678965 cttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 18678886  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 18074529 - 18074590
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttctt 63  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||    
T  18074529 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 18074590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 18698810 - 18698726
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||| | |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  18698810 caacacttgcgaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 18698726  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 18730896 - 18730830
Alignment:
Q  20 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  18730896 tttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 18730830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 18654857 - 18654805
Alignment:
Q  32 ttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||||||||||||||||||   |||||||||| | ||||||||||||||||||    
T  18654857 ttgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagaaaattca 18654805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 18723495 - 18723411
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||||| || | ||||||||||  |||||||||||||||||||   |||||||||| | || |||||||| ||||||||    
T  18723495 caacacttgcaaaaggaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaacgtgagagagaattcagc 18723411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 28127089 - 28126860
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctaga 101  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||  |  |||||||||| | |||| |   | ||  | |  |    
T  28127089 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagatttcaactccatataatttgaa 28126990  T
Q  102 gcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccgg 201  Q
     ||||||||| |  |  | ||||  ||||| ||||||||||||||||||||||||| |  ||||||||||||| |||||||||| |||||||||  | |     
T  28126989 acatctccaagaaaagctccttttgaaaacagttggattggacattaagttaggaggtgttagtgagggaattgcaatcataaaacaaaggctatgcaga 28126890  T
Q  202 aaaaaggttctattggttcttgatgatgtc 231  Q
    || ||| |||| ||| ||||||||||||||    
T  28126889 aagaagattcttttgattcttgatgatgtc 28126860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 267754 - 267670
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||||||||||| | ||||||||  ||||||||||||||||| |  |||||||||||||  |||||||||||||||||||    
T  267754 caacccttgcaagagcaatctataattttattgctgatcaatttgaaggattatgttttcttcatgatgtgagagaaaattcagc 267670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 26136668 - 26136851
Alignment:
Q  14 gagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaa 113  Q
    ||||||||||||||||  |||| |||||||||||| |  | || || |||||||||||| ||||||||||||  ||| ||||  ||||  |||||||| |    
T  26136668 gagcagtttataatttgattgcggatcaatttgaaggattgtgcttccttcacaatgtgcgagaaaattcagttaaatatggcttagaatatctccaaga 26136767  T
Q  114 ggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctaca 197  Q
    | |  | || |||||| |  | |||||||| |||||||||||| ||  |||| | |||||||||||||||||  ||||||||||    
T  26136768 gcagctcctctccaaatcaatcggattggagattaagttaggacatgttagtaaaggaattccaatcataaaagaaaggctaca 26136851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 28163664 - 28163561
Alignment:
Q  128 aaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatga 227  Q
    |||| ||| ||| ||||||||||||||||| |  ||||||||||||| |||||||||| |||||||||||  | || ||  |||| ||| ||||||||||    
T  28163664 aaacagttagatcggacattaagttaggaggtgttagtgagggaattacaatcataaaacaaaggctacatagaaataaaattcttttgattcttgatga 28163565  T
Q  228 tgtc 231  Q
    ||||    
T  28163564 tgtc 28163561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 28163789 - 28163707
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 84  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||  |  |||||||||| ||||||    
T  28163789 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagaattca 28163707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 2953 - 2869
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  2953 caacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 2869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 29273252 - 29273168
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||||||||||| | ||||||||  |||||||||||||||||  | |||||||||||||  |||||||||| ||||||||    
T  29273252 caacccttgcaagagcaatctataatttttttgctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattcagc 29273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 16440991 - 16441052
Alignment:
Q  169 ggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 230  Q
    |||||||||||||||||||| ||| |   ||||||||||||||| ||||||||||| |||||    
T  16440991 ggaattccaatcataaagcagaggttcagccggaaaaaggttcttttggttcttgacgatgt 16441052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 60337 - 60398
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttctt 63  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||    
T  60337 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 60398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 8255 - 8339
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  8255 caacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 8339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 4126 - 4042
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||| || |||| ||||||||||  |||||||| ||||||||||   |||||||||| | ||||||||||| ||||||||    
T  4126 caacacttggaaaagcaatttataattttattgctgatgaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 4042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 13089 - 13005
Alignment:
Q  2 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 86  Q
    |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  13089 caacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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