View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_99 (Length: 236)

Name: NF5110_low_99
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_99
NF5110_low_99
[»] scaffold1652 (2 HSPs)
scaffold1652 (2-142)||(402-539)
scaffold1652 (141-227)||(574-660)
[»] chr6 (6 HSPs)
chr6 (44-142)||(14248274-14248372)
chr6 (29-146)||(14316805-14316922)
chr6 (30-146)||(14254077-14254190)
chr6 (141-227)||(14248153-14248239)
chr6 (157-227)||(14253963-14254033)
chr6 (157-227)||(14316691-14316761)
[»] scaffold0902 (2 HSPs)
scaffold0902 (31-142)||(3330-3441)
scaffold0902 (146-227)||(3209-3290)
[»] scaffold1801 (2 HSPs)
scaffold1801 (28-146)||(93-211)
scaffold1801 (146-227)||(256-337)
[»] scaffold1176 (3 HSPs)
scaffold1176 (2-144)||(183-322)
scaffold1176 (141-227)||(355-441)
scaffold1176 (2-118)||(1300-1416)
[»] chr4 (11 HSPs)
chr4 (13-144)||(37241953-37242087)
chr4 (2-104)||(37245019-37245121)
chr4 (5-104)||(37253101-37253200)
chr4 (157-225)||(37244886-37244954)
chr4 (162-222)||(37252947-37253007)
chr4 (157-227)||(37232696-37232766)
chr4 (5-53)||(37237812-37237860)
chr4 (155-227)||(37257067-37257139)
chr4 (5-104)||(37232852-37232951)
chr4 (2-39)||(37245288-37245325)
chr4 (5-53)||(37257256-37257304)


Alignment Details
Target: scaffold1652 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 402 - 539
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   || |  |||    
T  402 atttctccctccgctaactcaacggtggcatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctc---caccatctc 498  T
Q  102 ctcaagcttcccccgcagccactcctgctattactccatcg 142  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  499 ctcaagcttcccccgcagccactcctgctattactccatcg 539  T

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Target: scaffold1652; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 574 - 660
Alignment:
Q  141 cgtcgacaaacgctgccgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574 cgtccacaaacgctgccaccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 660  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 14248372 - 14248274
Alignment:
Q  44 cctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcctgctattactccatcg 142  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  14248372 cctgtgaagagcagtccttctccttcaccgtctgccatcaactctccatcatctcctcctcaagctttccccgcagccactcctgcaattactccatcg 14248274  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 14316922 - 14316805
Alignment:
Q  29 gcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcctg 128  Q
    |||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |    
T  14316922 gcatctgctcccgtacctgtgaagagcagtccttctatttcaccgtctgccatcaactctccatcatctcctcctcaagcttcccccgcagccactccgg 14316823  T
Q  129 ctattactccatcgtcga 146  Q
    | || |||||||| ||||    
T  14316822 ccatcactccatcatcga 14316805  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 14254190 - 14254077
Alignment:
Q  30 catctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcctgc 129  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   || |  ||||||||||||| || ||||| ||||||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctc---caccatctcctcaagcttcacctgcagctactcctgc 14254094  T
Q  130 tattactccatcgtcga 146  Q
    |||||||||||||||||    
T  14254093 tattactccatcgtcga 14254077  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 14248239 - 14248153
Alignment:
Q  141 cgtcgacaaacgctgccgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||    
T  14248239 cgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgt 14248153  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 14254033 - 14253963
Alignment:
Q  157 cgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  14254033 cgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgt 14253963  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 14316761 - 14316691
Alignment:
Q  157 cgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14316761 cgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgt 14316691  T

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Target: scaffold0902 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 3441 - 3330
Alignment:
Q  31 atctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcctgct 130  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||| |||||||| |||||| |||||||     
T  3441 atctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccatctcctcctcatgcttccccagcagccgctcctgcc 3342  T
Q  131 attactccatcg 142  Q
    ||||||||||||    
T  3341 attactccatcg 3330  T

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Target: scaffold0902; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 3290 - 3209
Alignment:
Q  146 acaaacgctgccgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3290 acaaacgctggcaccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgt 3209  T

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Target: scaffold1801 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 93 - 211
Alignment:
Q  28 ggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcct 127  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||    |||||||||||| ||||| || |||||  |||||    
T  93 ggcatctgctcctgttcctgtgaagagcagtccttctccttcaccgtctgccatcaactctccacaatctcctcctcatgcttcgccagcagctgctcct 192  T
Q  128 gctattactccatcgtcga 146  Q
    || ||||||||||||||||    
T  193 gccattactccatcgtcga 211  T

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Target: scaffold1801; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 256 - 337
Alignment:
Q  146 acaaacgctgccgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  256 acaaacgctgctgccgctttgaacagatttacagttgccggatctgctgctgtcgtccttttaactgctgctttgatgatgt 337  T

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Target: scaffold1176 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 183 - 322
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||| ||| ||||| | | ||| |||||||| |  |||||||||||||||||||| |||||||| |||||||||||||||    |||   |||    
T  183 atttctccctcagctaactcaaccgcggcgtctgctcctgaacctgtgaagagcagtccttctccttcaccatctgccatcaactctagaccat---ctc 279  T
Q  102 ctcaagcttcccccgcagccactcctgctattactccatcgtc 144  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  280 ctcaagcttcccccgcagccacccctgctattactccatcgtc 322  T

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Target: scaffold1176; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 355 - 441
Alignment:
Q  141 cgtcgacaaacgctgccgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||| |||||||  |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  355 cgtccacaaacgacgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgt 441  T

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Target: scaffold1176; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 1300 - 1416
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||| ||| ||||| ||| ||||| |||||  || |||||||||||||||||||| |||||||||| ||||||||||| ||   |||||||||    
T  1300 atttctccctcagctaactcaacggcggcatatgctcgtgtacctgtgaagagcagtccttctccttcaccgtgtgccatcaactgtccaccatctcctc 1399  T
Q  102 ctcaagcttcccccgca 118  Q
    |||| ||||||||||||    
T  1400 ctcatgcttcccccgca 1416  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 37242087 - 37241953
Alignment:
Q  13 cgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcct---cctcaagct 109  Q
    |||| ||||||||||||||||| ||||||| ||||| | |||||||||||| ||||||||||| |||||||||||||   ||||||||   ||||| ||     
T  37242087 cgctaactcaccggtggcatcttctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccaccatctcctcctcctcacgcc 37241988  T
Q  110 tcccccgcagccactcctgctattactccatcgtc 144  Q
    ||||| || ||| ||||||||||||||||||||||    
T  37241987 tcccctgctgccgctcctgctattactccatcgtc 37241953  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 37245121 - 37245019
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||| |||||| || ||||||||  ||| ||||||||   |||||||||    
T  37245121 atttctccctccgctaactcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctc 37245022  T
Q  102 ctc 104  Q
    |||    
T  37245021 ctc 37245019  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 37253200 - 37253101
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctc 104  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||||| |  ||| || |||||||| || |||||||||||||   ||||||||||||    
T  37253200 tctccctccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctc 37253101  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 37244954 - 37244886
Alignment:
Q  157 cgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgat 225  Q
    |||| |||| |||||||| || |||||||||||||||||||| ||||||||| |||||| |||||||||    
T  37244954 cgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgat 37244886  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 37253007 - 37252947
Alignment:
Q  162 ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgat 222  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||    
T  37253007 ctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgat 37252947  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 37232766 - 37232696
Alignment:
Q  157 cgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||| ||||||| ||||| || |||||||||||||||||||| ||| ||||| |||| |||||||||||||    
T  37232766 cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgt 37232696  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 37237860 - 37237812
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaaga 53  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  37237860 tctccctccgctgactcaccggtggcatctcctcccgtacctgtgaaga 37237812  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 37257139 - 37257067
Alignment:
Q  155 gccgccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 227  Q
    |||||| |||| |||||||| || ||||| ||||||||||||||  |||||||| | ||||||||||||||||    
T  37257139 gccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgt 37257067  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 37232951 - 37232852
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctc 104  Q
    ||||||||||||||||||||||  |||||| ||||||  ||||||||||    ||| || ||||| || || |||||||||||||   ||||||||||||    
T  37232951 tctccctccgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctc 37232852  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 37245325 - 37245288
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcc 39  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  37245325 atttctccctccgctaactcaccagtggcatctgctcc 37245288  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 37257304 - 37257256
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaaga 53  Q
    ||||| ||||||  |||||||||||||||| ||||||| ||||||||||    
T  37257304 tctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaaga 37257256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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