View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111-Insertion-1 (Length: 1077)
Name: NF5111-Insertion-1
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 10 - 725
Target Start/End: Original strand, 52444734 - 52445451
Alignment:
| Q |
10 |
aaattcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattcacaaacaataacaataatagattgctctatgagcaaacataaacacaca |
109 |
Q |
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| T |
52444734 |
aaattcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattca-aaacaataacaataatagattgctctatgagcaaacataaacacaaa |
52444832 |
T |
|
| Q |
110 |
aaatgcaaaaagtacttgctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcc |
209 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52444833 |
aaatgcaaaaagtactttctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcc |
52444932 |
T |
|
| Q |
210 |
cacaacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgtgaaagtagtatggagcctcccatctaagctggcaaag |
309 |
Q |
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| T |
52444933 |
cacaacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgcgaaagtagcatggagcctcccatctaagctggcaaag |
52445032 |
T |
|
| Q |
310 |
aggcctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcaagaaccttagcaa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
52445033 |
aggcctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcacggaccttagcaa |
52445132 |
T |
|
| Q |
410 |
tcctaacacaaagataaggtgttgcactgccacgcctgtgcatgaccctaatttgcatcatgcactgctccacggacttgtcagccatgtcatgctcgta |
509 |
Q |
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| T |
52445133 |
tcctaacacaaagataaggtgttgcactgccacgcctgtgcatgaccttaatttgcatcatgcactgctccacgtacttgtcagccatgtcatgctcgta |
52445232 |
T |
|
| Q |
510 |
cacaatgtcattcttgatgacatccatatgatattcatgctcagccactcctttgtaaagtatgacctttctaacatacttaaatttgtccacgagaacg |
609 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445233 |
cataatgtcattcttgatgacatccatatgatatccatgctcagccactccttcgtaaagtatgacctttctaacatacttaaatttgtccacgagaacg |
52445332 |
T |
|
| Q |
610 |
atattttcagacacatgataatcaggcaaggcaaaggaaatgcaacaatgtccacgaat-catcaaccacaaac--ttggagcaatccaccagcaatggt |
706 |
Q |
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| T |
52445333 |
agatcttcggacacataataatcaggcaaggcaaaggaaatgcaacaatgtccacgaatccatcaaccacaaactgttggagcaatccaccagcaatggt |
52445432 |
T |
|
| Q |
707 |
aaggacctccatcggagat |
725 |
Q |
| |
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|||||||||| |||||||| |
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| T |
52445433 |
aaggacctccgtcggagat |
52445451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 723 - 989
Target Start/End: Original strand, 52445741 - 52446000
Alignment:
| Q |
723 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
822 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445741 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtct |
52445840 |
T |
|
| Q |
823 |
acaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccgtgacacgtatgatgatgttgatgtttgatt |
922 |
Q |
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| T |
52445841 |
aaaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctcatgatatgagtttgaaccctgacacgtatgatgatgttgatgtttgatt |
52445940 |
T |
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| Q |
923 |
tactcttcatgacttcatgkgttgttgtat-atgctttggttgagttgatgctctgttcacaatcata |
989 |
Q |
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|||| ||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
52445941 |
tact--------cttcatgtgttgttgtataatgctttggtcgagttgatactctgttcacaatcata |
52446000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 728 - 857
Target Start/End: Original strand, 52447657 - 52447786
Alignment:
| Q |
728 |
aattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaag |
827 |
Q |
| |
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||||||| |||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||| || || |||| |||||||||||||||| |
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| T |
52447657 |
aattaaattcatattaatacacatcttatcctttaattgaatttcaacatgtttaatttcttcatacaaacttttaagcactagcacatttgtctacaag |
52447756 |
T |
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| Q |
828 |
ttttaactaaacatgtaaaaatatcaaaat |
857 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
52447757 |
tttgaactaaacatgtaaaaatatcaaaat |
52447786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 774 - 900
Target Start/End: Original strand, 52446722 - 52446848
Alignment:
| Q |
774 |
atatgtttaatttcttcttacaaactattgagtactaacacatttgtctacaagttttaactaaacatgtaaaaatatcaaaatttctaggtcgaacctc |
873 |
Q |
| |
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||||||||||||| ||| |||||| |||| || ||||||| || ||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| |
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| T |
52446722 |
atatgtttaatttattcatacaaattattaagcactaacatatctgtctacaagttttaggtaaacatgtaaaaatattgaaatctctaggtcggacctc |
52446821 |
T |
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| Q |
874 |
atgatatgagtttgaaccgtgacacgt |
900 |
Q |
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|||||||||||||||||| ||| |||| |
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| T |
52446822 |
atgatatgagtttgaaccttgatacgt |
52446848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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