View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111-Insertion-2 (Length: 449)
Name: NF5111-Insertion-2
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 49704830 - 49704391
Alignment:
| Q |
8 |
ggtcttgctccaatctgcatctttttcttttcaaatagcactgtcttagaaatttttggtctgaagttgaacctctcaggcnnnnnnntaccgttcctcc |
107 |
Q |
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| T |
49704830 |
ggtcttgctccaatctgcatttttttcttttcaaatagcactgtcttagaaatttttggtctgaagttgaacctctcaggcaaaaaaataccgttcatcc |
49704731 |
T |
|
| Q |
108 |
agattgttatagtatatttccatttatataaatagttgacataattttttatgaagttaagacgagcttgaaacacttcattttacatacatgtattggt |
207 |
Q |
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| T |
49704730 |
agattgttatagtatatttccattcatataaatagttgacataattttttatgaagttaagacgagcttgaaacacttcattttacatacgtgtattggt |
49704631 |
T |
|
| Q |
208 |
tgcagaaattcaacttgnnnnnnntttgtttcagatcattgcaatttcaaccgactttcaaatttctaaataatccctagtctataggatacaacctaaa |
307 |
Q |
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| T |
49704630 |
tgcataaattcaacttgaaaaaaatttgtttcagatcattgcaatttgaaccgactttcaaatttctaaataatccctagtctctaggatacaacctaaa |
49704531 |
T |
|
| Q |
308 |
caaataaaaaataactc-aaattgtgctcaatttctcccaatcaaacccatctttagtgaataattcttgtagcaaacacatcaaaatccactgaaaaat |
406 |
Q |
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| T |
49704530 |
caaataaaaaataactcaaaattgtgctcaacttctcccaatcaaacccatctttagtgaataattattgtagcaaacacatcaaaatccactgaaaaat |
49704431 |
T |
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| Q |
407 |
cagactaatttctcttttccctcttgattcacattgatat |
446 |
Q |
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| T |
49704430 |
tagactaattcctcatttccctcttgattcacattgatat |
49704391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 49698216 - 49698157
Alignment:
| Q |
301 |
acctaaacaaataaaaaataactcaaattgtgctcaatttctcccaatcaaacccatctt |
360 |
Q |
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| T |
49698216 |
acctaaacatataaaaaataactcaaattgtgctaaatttgtcccaagcaaacctatctt |
49698157 |
T |
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