View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111-Insertion-4 (Length: 290)
Name: NF5111-Insertion-4
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111-Insertion-4 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 2303977 - 2304259
Alignment:
| Q |
8 |
caatgtatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagttt |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303977 |
caatgtatatagttcttttagattttgaaaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagttt |
2304076 |
T |
|
| Q |
108 |
ggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgagaaatctctggaaaattct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304077 |
ggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgagaaatctctggaaaattct |
2304176 |
T |
|
| Q |
208 |
ccaacttgccacatggtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatgacatcaaaaaccccatca |
290 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304177 |
ccaacttgccacatagtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatgacatcaaaaaccccatca |
2304259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 34991223 - 34990954
Alignment:
| Q |
15 |
tatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgt |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
34991223 |
tatagttcctttagattttgacaacctccatcatgaaaatgtaaactttcaccttcataagctttgttgatgattgagagggacaacaagtttggcatgt |
34991124 |
T |
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| Q |
115 |
tttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgagaaat---ctctggaaaattctccaa |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||| |||||||| |
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| T |
34991123 |
tttctagatacttaattggatcatcagttaataaggaatatgctaaatcaaacttaacaagatttttaagttgaggaatccactctggaaacttctccaa |
34991024 |
T |
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| Q |
212 |
cttgccacatggtttaagatttcgaagcatag---gtggaagcgaaaccaaatgtaaatcaatgacatca |
278 |
Q |
| |
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|||| ||||| ||||||||||||||||||||| ||||| | ||||||||||| | ||||||||||||| |
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| T |
34991023 |
cttgacacatagtttaagatttcgaagcataggtagtggaggtgaaaccaaatgcatatcaatgacatca |
34990954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 34977341 - 34977075
Alignment:
| Q |
18 |
agttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgtttt |
117 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34977341 |
agttccttaagattttgacaacctccatcatgaaaatgtaaactttcgcctacataagcattggagatgattgagagggacaacaagtttggcatgtttt |
34977242 |
T |
|
| Q |
118 |
ctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgagaaat---ctctggaaaattctccaactt |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||| |||||||| ||| ||| || || ||||||||||| |
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| T |
34977241 |
ctagatacttaattggatcatcagttaagaaggaacgtgctaattccaacttaacatgatttgtaagttgaggaatccactccgggaacttctccaactt |
34977142 |
T |
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| Q |
215 |
gccacatggtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatgacatcaaaa |
281 |
Q |
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| T |
34977141 |
gccacatagtttaagatttcgaagcataggtggaggcgaaaccaaatctaaatcaatgacatcaaaa |
34977075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 34984545 - 34984295
Alignment:
| Q |
18 |
agttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgtttt |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34984545 |
agttcctttagattttgacaacctccatcatgaaaatgtaaactttcgccttcataagcattggagatgattgagagggacaacaagtttggcatgtttt |
34984446 |
T |
|
| Q |
118 |
ctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgagaaatctctggaaaattctccaacttgcc |
217 |
Q |
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|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||||||| || |
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| T |
34984445 |
ataaatac--aattggatcatcagttaagaaggaatttgctaaatcaaacttaacaagatttttaagttgag--------gaaaacttctccaactttcc |
34984356 |
T |
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| Q |
218 |
acatggtttaagatttcgaagcata---ggtggaagcgaaaccaaatgtaaatcaatgaca |
275 |
Q |
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| T |
34984355 |
atatagtttaaaacttcgaagcatatgtagtggaggcgaaaccaaatgtaaatcaatgaca |
34984295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 34984241 - 34984125
Alignment:
| Q |
165 |
aacttaacaagattttgaagttgagaaatc---tctggaaaattctccaacttgccacatggtttaagatttcgaagcataggtggaagcgaaaccaaat |
261 |
Q |
| |
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|||||||||||||||| |||||||| |||| ||||||| ||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| |
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| T |
34984241 |
aacttaacaagatttttaagttgaggaatccactctggaatcttctccaacctgccaccaagtttaagaattcgaagcataggtggaggcgaaaccaaat |
34984142 |
T |
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| Q |
262 |
gtaaatcaatgacatca |
278 |
Q |
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||||||||||||||||| |
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| T |
34984141 |
gtaaatcaatgacatca |
34984125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 40581898 - 40581630
Alignment:
| Q |
18 |
agttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgtttt |
117 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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| T |
40581898 |
agttcctttagattttgacaacctccgtcatgaaaatgtaagctttcgccttcataagcattgtagatgattgagagggacaacatgtttagcatgtttt |
40581799 |
T |
|
| Q |
118 |
ctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgagaaa---tctctggaaaattctccaactt |
214 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||| |||| |||||| |
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| T |
40581798 |
ctagatacttaattggatcatcatttaagaaggaatttgctaaatcaaacttaacaagatttttaagttgaggaacccactctggaaacttcttcaactt |
40581699 |
T |
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| Q |
215 |
gccacatggtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatgacatcaaaaac |
283 |
Q |
| |
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||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40581698 |
gccacatagtttaagctttcgaagcataggtggaggcgaaaccaaatgtaaatcaatgacatcataaac |
40581630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 22619375 - 22619507
Alignment:
| Q |
13 |
tatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcat |
112 |
Q |
| |
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|||||||||| ||||||||||| | |||||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||| |
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| T |
22619375 |
tatatagttcctttagattttgcaaccctccatcgtgaaaatgtaaactttcaccttcataagcattgttgatgattgagagggacaacaagttttgcag |
22619474 |
T |
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| Q |
113 |
gttttctagatacttaattggatcatcagttaa |
145 |
Q |
| |
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||||| || |||| |||||||| ||| |||| |
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| T |
22619475 |
attttcaagcgactttattggatcttcaattaa |
22619507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 22646671 - 22646801
Alignment:
| Q |
15 |
tatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgt |
114 |
Q |
| |
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|||||||| |||||||||||| | ||||||||||||||||||||| ||| |||| |||||| || | ||||||||||| ||||| ||||||| ||| | |
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| T |
22646671 |
tatagttcctttagattttgaaaccctccatcatgaaaatgtaaaatttcacctttataagctttgttaatgattgagagagacaataagtttgacattt |
22646770 |
T |
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| Q |
115 |
tttctagatacttaattggatcatcagttaa |
145 |
Q |
| |
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| |||| || | ||||||| ||||||||| |
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| T |
22646771 |
tatctaaatgttctattggattatcagttaa |
22646801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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