View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111-Insertion-5 (Length: 311)
Name: NF5111-Insertion-5
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111-Insertion-5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 23430961 - 23430655
Alignment:
| Q |
8 |
tgttatgataatttaacagcccctgatttaatagttttctttggatccatcccatataaacaaacaatccaagaaaatgaacacttaacattgcatcttc |
107 |
Q |
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| T |
23430961 |
tgttatgataatttaacaacccctgatttaatagttttctttggagccatcccatataaacaaacaatccaagaaaatgaacacttaacattgcatcttc |
23430862 |
T |
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| Q |
108 |
atttccactagacccacatcaacaaatcaaattatccta---atacataaagtacattaactagtataactattataatataactggaaggaatgtaaga |
204 |
Q |
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| T |
23430861 |
atttccactagacccacatcaacaaatcaaattatcctcctcatacataaagtacattaactagtataactattataatataactggaaggaatgtaaga |
23430762 |
T |
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| Q |
205 |
cgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatttgcgatatttccaacatcttttgcagtttcaccaatcctatctgca |
304 |
Q |
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| T |
23430761 |
cgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgattcgcgatatttccaacatcttttgcagtttcaccaatcctatctgca |
23430662 |
T |
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| Q |
305 |
ccttcac |
311 |
Q |
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||||||| |
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| T |
23430661 |
ccttcac |
23430655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
138 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
237 |
Q |
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|||||||| ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||| |||| ||||| |||| |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
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| Q |
238 |
tacaacatcttgt |
250 |
Q |
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||| ||||||||| |
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| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
125 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
191 |
Q |
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|||||||||| ||||||| || || |||||||||||| ||| | ||||||| ||||||||||||||| |
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| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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