View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111-Insertion-6 (Length: 376)
Name: NF5111-Insertion-6
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 43077633 - 43077257
Alignment:
| Q |
8 |
ctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactccttgttttccaactgctcctggtttaggaattggagcagtatt |
107 |
Q |
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| T |
43077633 |
ctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactccttgttttccaactgctcctggtttaggaattggagcagtatt |
43077534 |
T |
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| Q |
108 |
ctgtatacatacacaca--------cagtcttaattttcttgtaacaacacaaacatagaaatgaggcttgttttgttacttactttgaatgtgatgttc |
199 |
Q |
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| T |
43077533 |
ctgtatacatacatacatacactcacagtcttaattttcttgtaacaacacaaacatagaaatgaggcttgttttgttacttactttgaatgtgatgttc |
43077434 |
T |
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| Q |
200 |
ttagcaatgaaataaggtgaattcactgcaaaagttgcagaaccataagttcctagtgtctgtccttttgctccaggattaggagttagagcagtgtcac |
299 |
Q |
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| T |
43077433 |
ttagcaatgaaataaggtgaattcactgcaaaagttgccgaaccataagttcctagtgtctgtccttttgctccaggattaggagttagagcagtgtcac |
43077334 |
T |
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| Q |
300 |
cccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactttc |
376 |
Q |
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| T |
43077333 |
cccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactttc |
43077257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 376
Target Start/End: Original strand, 33965670 - 33965865
Alignment:
| Q |
175 |
gttacttactttgaatgtgatgttcttagcaatgaaataaggtgaattcactgcaaaagttgcagaaccataagttcctagtgtctgtccttttgctcca |
274 |
Q |
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| T |
33965670 |
gttacatactttgaatgtgatgttcttggcaatgaaataaggtgaattaactgcaaaagttgctgaaccatatgttcccaatggattccctctt------ |
33965763 |
T |
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| Q |
275 |
ggattaggagttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactt |
374 |
Q |
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| T |
33965764 |
ggaccaggtgttgcagcagtgtcaccccattgaacaattgttgtatctgcaccatctccttctatggttatgaaggattttaaaggaggaatgttaactt |
33965863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 338
Target Start/End: Original strand, 20311437 - 20311564
Alignment:
| Q |
205 |
aatgaaataaggtgaattcactgcaaaagttgcagaacca----taagttcctagtgtctgtccttttgctccaggattaggagttagagcagtgtcacc |
300 |
Q |
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| T |
20311437 |
aatgaaacaaggtgaattcactgcaaatgttgcagaaccataggtaggttcctagtg---------ttgccctagtattaggagtttgagaagtgtcacc |
20311527 |
T |
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| Q |
301 |
ccattgaacaattgttttatctgcacctgctccttgta |
338 |
Q |
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| T |
20311528 |
ccattgaac-tttagtttatctgcacctgctccttgta |
20311564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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