View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111-Insertion-7 (Length: 322)
Name: NF5111-Insertion-7
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 32769713 - 32770027
Alignment:
| Q |
8 |
gtaaatggggaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaaga |
107 |
Q |
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| T |
32769713 |
gtaaatggggaatgttccaaattgttaatcatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaaga |
32769812 |
T |
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| Q |
108 |
agaaaaggagcaatatgctaaacctcctgattctaaatctattgaaggttatggatctaagcttggtaatgatattgataacaagagaggttgggttgat |
207 |
Q |
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| T |
32769813 |
agaaaaggagcaatatgctaaacctcctgattctaaatctattgaaggttatggatctaagcttggtaatgatattgataacaagagaggttgggttgat |
32769912 |
T |
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| Q |
208 |
catttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggttagttatttatgtatgcgtcttat |
307 |
Q |
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| T |
32769913 |
catttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggttacttatttatgcatgcctcttat |
32770012 |
T |
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| Q |
308 |
tacaagcttctataa |
322 |
Q |
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| T |
32770013 |
tacaagcttctataa |
32770027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 24404502 - 24404621
Alignment:
| Q |
13 |
tggggaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaagaaa |
112 |
Q |
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| T |
24404502 |
tggggaatgtttcaaattgtgaaccatgaaattccaaatgaagttataagaaagttgcaaagtgttggtaaagagttttttgagttaccacaagatgaaa |
24404601 |
T |
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| Q |
113 |
aggagcaatatgctaaacct |
132 |
Q |
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| T |
24404602 |
aagaggtttatgctaaacct |
24404621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 24398879 - 24398972
Alignment:
| Q |
190 |
aagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggt |
283 |
Q |
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| T |
24398879 |
aagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctaacaaccctgcttcgtacaggt |
24398972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 24398699 - 24398799
Alignment:
| Q |
10 |
aaatggggaatgttccaaattgttaaccatgaaatacctacagaacttataaccaaacttcaaagtgttggaaaaacgttttttgagttacctcaagaag |
109 |
Q |
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| T |
24398699 |
aaatggggaatgtttcaaattgtgaaccatgatattccaaatgaagttataaaaaaattgcaaagtgttggtaaagaattctttgagttaccacaagaag |
24398798 |
T |
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| Q |
110 |
a |
110 |
Q |
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| T |
24398799 |
a |
24398799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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