View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111-Insertion-8 (Length: 250)

Name: NF5111-Insertion-8
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111-Insertion-8
NF5111-Insertion-8
[»] chr6 (3 HSPs)
chr6 (11-248)||(31030008-31030243)
chr6 (173-212)||(21256762-21256801)
chr6 (172-204)||(21314802-21314834)
[»] chr4 (3 HSPs)
chr4 (12-167)||(28092764-28092920)
chr4 (100-144)||(52012796-52012840)
chr4 (27-67)||(19469108-19469148)
[»] chr5 (8 HSPs)
chr5 (12-166)||(35622811-35622966)
chr5 (11-148)||(38832831-38832968)
chr5 (100-144)||(13015399-13015443)
chr5 (100-144)||(13086771-13086815)
chr5 (100-141)||(13478154-13478195)
chr5 (116-168)||(35622939-35622992)
chr5 (100-144)||(29989980-29990024)
chr5 (100-144)||(38010723-38010767)
[»] chr3 (7 HSPs)
chr3 (12-166)||(46489676-46489831)
chr3 (36-166)||(42273329-42273460)
chr3 (12-105)||(34955092-34955185)
chr3 (100-144)||(31187179-31187223)
chr3 (100-144)||(34029400-34029444)
chr3 (100-144)||(42664691-42664735)
chr3 (100-144)||(47186193-47186237)
[»] chr2 (1 HSPs)
chr2 (12-158)||(37811110-37811256)
[»] scaffold0163 (1 HSPs)
scaffold0163 (12-67)||(28009-28064)
[»] chr8 (1 HSPs)
chr8 (100-144)||(1514821-1514865)
[»] chr1 (2 HSPs)
chr1 (36-142)||(18056068-18056175)
chr1 (103-144)||(8809752-8809793)
[»] scaffold0016 (1 HSPs)
scaffold0016 (173-212)||(70560-70599)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 31030243 - 31030008
Alignment:
Q  11 aataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtaca 110  Q
    |||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||    
T  31030243 aatatcaatgttatataacattggtcaatgaaggtatgtcacatagcactttacatgaatatcttttctttttcttctttagactttcatatgtggcaca 31030144  T
Q  111 ctgttattggtcaatgttatataatattggtaccccaacggtatacaa-tggtgtccgactcgatgtagttattttcagcacattatagtgacatgtttt 209  Q
    |||||||||  |||| |||||||| ||||||| ||||||||||  ||| ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  31030143 ctgttattgaccaatattatataacattggtatcccaacggtacgcaagtggtgtccgactcgatgtagttattttgaacacattatagtgacatgtttt 31030044  T
Q  210 catgaataaactaggaggagggtaggagacagatttgcc 248  Q
    ||||||||||||   ||||| ||||||||||||||||||    
T  31030043 catgaataaact---aggagagtaggagacagatttgcc 31030008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 21256762 - 21256801
Alignment:
Q  173 atgtagttattttcagcacattatagtgacatgttttcat 212  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  21256762 atgtagttattttcagcacattagagtgacatgttctcat 21256801  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 21314802 - 21314834
Alignment:
Q  172 gatgtagttattttcagcacattatagtgacat 204  Q
    |||||||||||||||||||||||| ||||||||    
T  21314802 gatgtagttattttcagcacattacagtgacat 21314834  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 28092764 - 28092920
Alignment:
Q  12 ataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtacac 111  Q
    |||||||||||||  || ||||  |||||||| | || || ||| ||||| ||||| || |||||||| |||| |||||| || ||| ||||||| ||||    
T  28092764 ataccaatgttatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagaccttcctatgtggcacac 28092863  T
Q  112 tgttattggtcaatgttatataatattggtaccccaacggtatacaa-tggtgtccg 167  Q
    | | ||||  ||||||||||||| ||||||| ||||| |||| |||| |||||||||    
T  28092864 tttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtccg 28092920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 52012840 - 52012796
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  52012840 tatgtggcacacttttattggtcaatgttatataacattggtacc 52012796  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 19469148 - 19469108
Alignment:
Q  27 aatattggtcaatgaaggtatgtcacatagcactttacatg 67  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  19469148 aatattggtcaatgaagatgtgtcacatagcacttcacatg 19469108  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 35622966 - 35622811
Alignment:
Q  12 ataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtacac 111  Q
    |||||||||||||  || ||||  |||||||| | || || ||| ||||| ||||| || |||||||| |||| |||||| || ||| ||||||| ||||    
T  35622966 ataccaatgttatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagaccttcctatgtggcacac 35622867  T
Q  112 tgttattggtcaatgttatataatattggtaccccaacggtatacaa-tggtgtcc 166  Q
    | | ||||  ||||||||||||| ||||||| ||||| |||| |||| ||||||||    
T  35622866 tttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 35622811  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 38832831 - 38832968
Alignment:
Q  11 aataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtaca 110  Q
    ||||||||| ||||  || |||||||||  ||| | || ||||||||| || ||||| || ||||||||  |||||||||| || ||| ||||||| |||    
T  38832831 aataccaatattatataacattggtcaacaaagatgtgccacatagcatttcacatgtatatcttttctcgttcttctttagaccttcctatgtggcaca 38832930  T
Q  111 ctgttattggtcaatgttatataatattggtaccccaa 148  Q
    || | ||||  ||||||||||||| ||||||| |||||    
T  38832931 ctttcattgaccaatgttatataacattggtatcccaa 38832968  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 13015443 - 13015399
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  13015443 tatgtggcacactcttattggtcaatgttatataacattggtacc 13015399  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 13086815 - 13086771
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  13086815 tatgtggcacactcttattggtcaatgttatataacattggtacc 13086771  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 13478154 - 13478195
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggt 141  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  13478154 tatgtggcacactcttattggtcaatgttatataacattggt 13478195  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 35622939 - 35622992
Alignment:
Q  116 attggtcaatgttatataatattggtaccccaacggtatacaa-tggtgtccga 168  Q
    ||||||||||||||||||| ||||||| ||||| |||| |||| ||||||||||    
T  35622939 attggtcaatgttatataacattggtatcccaatggtacacaagtggtgtccga 35622992  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 29990024 - 29989980
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||||    
T  29990024 tatgtggcacactcttattggtcaatgttatataacattgatacc 29989980  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 38010723 - 38010767
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||| ||||||||||||| |||||||||    
T  38010723 tatgtggcacactcttattggccaatgttatataacattggtacc 38010767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 46489676 - 46489831
Alignment:
Q  12 ataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtacac 111  Q
    |||||||||||||  || ||||  |||||||| | || || ||| ||||| ||||| || |||||||| |||| |||||| || ||| ||||||| ||||    
T  46489676 ataccaatgttatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagaccttcctatgtggcacac 46489775  T
Q  112 tgttattggtcaatgttatataatattggtaccccaacggtatacaa-tggtgtcc 166  Q
    | | ||||  ||||||||||||| ||||||| ||||| |||| |||| ||||||||    
T  46489776 tttcattgaccaatgttatataacattggtatcccaatggtacacaagtggtgtcc 46489831  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 42273460 - 42273329
Alignment:
Q  36 caatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtacactgttattggtcaatgttatataat 135  Q
    |||||||| | || || ||| ||||| ||||| || |||||||| |||| |||||| || ||| ||||||| ||||| | ||||  |||||||||||||     
T  42273460 caatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagaccttcctatgtggcacactttcattgaccaatgttatataac 42273361  T
Q  136 attggtaccccaacggtatacaa-tggtgtcc 166  Q
    ||||||| ||||| |||| |||| ||||||||    
T  42273360 attggtatcccaatggtacacaagtggtgtcc 42273329  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 34955092 - 34955185
Alignment:
Q  12 ataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtg 105  Q
    |||||||||||||  || ||||| |||||||||| ||||| ||||||||| | ||| || |||||||| |||| |||||| || ||| ||||||    
T  34955092 ataccaatgttatataacattggccaatgaaggtgtgtcatatagcacttcagatgcatatcttttctctttcctctttagacattcctatgtg 34955185  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 31187179 - 31187223
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  31187179 tatgtggcacactcttattggtcaatgttatataacattggtacc 31187223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 34029400 - 34029444
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| |||||| |||||||||||||| |||||||||    
T  34029400 tatgtggcacactcttattgatcaatgttatataacattggtacc 34029444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 42664735 - 42664691
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| |||||||||||||||||||||  ||||||||    
T  42664735 tatgtggcacactcttattggtcaatgttatataactttggtacc 42664691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 47186237 - 47186193
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||| ||||| ||||||| ||||||||||||| |||||||||    
T  47186237 tatgtggcacactcttattggccaatgttatataacattggtacc 47186193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 37811110 - 37811256
Alignment:
Q  12 ataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatgaatgtcttttctttttcttctttaaactttcatatgtggtacac 111  Q
    |||||||||||||  || ||||| ||||||| || || ||||||||| || ||||| || | |||||| |||| |||||| || ||| ||||||| || |    
T  37811110 ataccaatgttatataacattggccaatgaaagtgtgccacatagcagttcacatgcatattttttctatttcctctttagacattcttatgtggcacgc 37811209  T
Q  112 tgttattggtcaatgttatataatattggtaccccaacggtatacaa 158  Q
      | |||| |||||||||||||| ||||||| ||||| |||| ||||    
T  37811210 cttcattgatcaatgttatataacattggtatcccaatggtacacaa 37811256  T

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Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 28009 - 28064
Alignment:
Q  12 ataccaatgttatgaaatattggtcaatgaaggtatgtcacatagcactttacatg 67  Q
    |||||||||||||  |||||||| |||||||||| ||||||||||||||| |||||    
T  28009 ataccaatgttatacaatattggccaatgaaggtgtgtcacatagcacttcacatg 28064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 1514865 - 1514821
Alignment:
Q  100 tatgtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||    
T  1514865 tatgtggtacactcttattgatcaatgttatataacattggtacc 1514821  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 18056068 - 18056175
Alignment:
Q  36 caatgaaggtatgtcacatagcactttacatgaat-gtcttttctttttcttcttta-aactttcatatgtggtacactgttattggtcaatgttatata 133  Q
    |||||||||| ||||||||||||||| ||||| ||  | |||||| ||||||||||| | | |||| |||||| ||||| | |||||||||| |||||||    
T  18056068 caatgaaggtgtgtcacatagcacttcacatgcatatttttttctctttcttctttagaccattca-atgtggcacactttcattggtcaatattatata 18056166  T
Q  134 atattggta 142  Q
    | |||||||    
T  18056167 acattggta 18056175  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 8809752 - 8809793
Alignment:
Q  103 gtggtacactgttattggtcaatgttatataatattggtacc 144  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  8809752 gtggcacactcttattggtcaatgttatataacattggtacc 8809793  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 70599 - 70560
Alignment:
Q  173 atgtagttattttcagcacattatagtgacatgttttcat 212  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  70599 atgtagttattttcggcacattatagtgacatgttatcat 70560  T

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