View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111_high_10 (Length: 369)

Name: NF5111_high_10
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111_high_10
NF5111_high_10
[»] chr3 (15 HSPs)
chr3 (4-363)||(47426378-47426737)
chr3 (1-122)||(44380279-44380400)
chr3 (1-72)||(50934525-50934596)
chr3 (1-72)||(17466298-17466369)
chr3 (5-72)||(31187145-31187212)
chr3 (4-122)||(33509708-33509826)
chr3 (1-122)||(37742750-37742871)
chr3 (5-72)||(42664702-42664769)
chr3 (5-72)||(47186204-47186271)
chr3 (187-237)||(50434097-50434147)
chr3 (2-72)||(35094572-35094644)
chr3 (5-72)||(34029366-34029433)
chr3 (13-72)||(39498744-39498803)
chr3 (1-44)||(32319468-32319511)
chr3 (1-42)||(10179868-10179909)
[»] chr5 (14 HSPs)
chr5 (1-111)||(39570079-39570189)
chr5 (4-122)||(33858563-33858681)
chr5 (1-122)||(11607559-11607680)
chr5 (1-72)||(19357336-19357407)
chr5 (1-72)||(1826284-1826355)
chr5 (5-122)||(33271643-33271760)
chr5 (5-72)||(29989991-29990058)
chr5 (33-122)||(42148203-42148292)
chr5 (1-72)||(9827813-9827884)
chr5 (5-72)||(13015410-13015477)
chr5 (5-72)||(38010689-38010756)
chr5 (5-72)||(13478120-13478187)
chr5 (5-71)||(13086782-13086848)
chr5 (26-72)||(37881191-37881237)
[»] chr4 (16 HSPs)
chr4 (5-111)||(21260823-21260929)
chr4 (1-110)||(33249411-33249520)
chr4 (1-122)||(12473729-12473850)
chr4 (1-122)||(12528138-12528259)
chr4 (1-122)||(35869596-35869717)
chr4 (5-70)||(52910126-52910191)
chr4 (1-110)||(22343362-22343471)
chr4 (5-72)||(52012807-52012874)
chr4 (5-58)||(34829172-34829225)
chr4 (7-66)||(1796163-1796222)
chr4 (12-72)||(49999663-49999723)
chr4 (13-122)||(51811951-51812060)
chr4 (1-53)||(55590507-55590559)
chr4 (28-72)||(9799438-9799482)
chr4 (42-72)||(33174581-33174611)
chr4 (5-69)||(46719959-46720023)
[»] chr2 (7 HSPs)
chr2 (1-122)||(34392106-34392227)
chr2 (1-72)||(21603984-21604055)
chr2 (13-122)||(23863828-23863937)
chr2 (1-72)||(7381717-7381788)
chr2 (5-71)||(37357997-37358063)
chr2 (7-122)||(41095811-41095926)
chr2 (4-122)||(4779613-4779731)
[»] chr8 (8 HSPs)
chr8 (5-122)||(41179588-41179705)
chr8 (17-121)||(4708333-4708437)
chr8 (1-122)||(24337855-24337976)
chr8 (33-122)||(11254053-11254142)
chr8 (7-72)||(32825910-32825975)
chr8 (37-72)||(1514864-1514899)
chr8 (1-72)||(18168410-18168481)
chr8 (1-72)||(18631967-18632038)
[»] chr7 (8 HSPs)
chr7 (5-122)||(35341565-35341682)
chr7 (5-71)||(48250183-48250249)
chr7 (1-72)||(40893116-40893188)
chr7 (7-122)||(48072418-48072533)
chr7 (5-69)||(31306951-31307016)
chr7 (5-122)||(32694595-32694712)
chr7 (26-69)||(40856481-40856524)
chr7 (22-72)||(23178469-23178519)
[»] chr1 (8 HSPs)
chr1 (1-122)||(29119349-29119470)
chr1 (1-69)||(25161334-25161402)
chr1 (1-122)||(32676161-32676282)
chr1 (1-122)||(8462153-8462274)
chr1 (5-72)||(8809715-8809782)
chr1 (1-72)||(2569062-2569133)
chr1 (5-68)||(3688917-3688980)
chr1 (18-69)||(8555471-8555522)
[»] scaffold0263 (1 HSPs)
scaffold0263 (6-72)||(23174-23240)
[»] chr6 (4 HSPs)
chr6 (1-122)||(1211869-1211990)
chr6 (1-122)||(5403901-5404022)
chr6 (5-72)||(34245596-34245663)
chr6 (4-122)||(32644862-32644979)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-72)||(34219-34290)
[»] scaffold0519 (1 HSPs)
scaffold0519 (33-122)||(11251-11340)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-72)||(73096-73168)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-122)||(13030-13152)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 47426378 - 47426737
Alignment:
Q  4 gtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatatt 103  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||       ||| |||||||||||||| | |||    
T  47426378 gtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatatttttttaaagggtgtgccacatggtacatt 47426477  T
Q  104 ctaattggccaatggtatacacacgtgctatccgtttacatgctgactggaaattattt-ggattgagaccctagctagctagcaagctctatgacttca 202  Q
    |||||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47426478 ctaattgggcaatggtatacacaagtgctatccgttcacaagctgactggaaattattttggattgagaccctagctagctagcaagctctatgacttca 47426577  T
Q  203 tttgccactttgtttcttgtgcacttctgtaaacaacctgggaatttcaggattttattttcatgtgttttacaaatggaggtctagatagcattgatga 302  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47426578 tttgccactttgtttcttgtgcacttctgtaaacaacctgg-aatttcaggattttattttcatgtgttttacaaatggaggtcaagatagcattgatga 47426676  T
Q  303 gatgctccacaaaacaatccttcatacaccaatgttgatgtcaccaacttcctgatgatgt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426677 gatgctccacaaaacaatccttcatacaccaatgttgatgtcaccaacttcctgatgatgt 47426737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 44380279 - 44380400
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    ||||||||||| |||| ||||||| ||||||||||||| |||| |||||||||||||| |||||||||||||       ||| |||||||||| || ||     
T  44380279 atggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatacttttttaaagggtgtgccacgtgacac 44380378  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||| ||||||||||    
T  44380379 attctaattggacaatggtata 44380400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 50934525 - 50934596
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||  ||||||||||||    
T  50934525 atggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17466298 - 17466369
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  17466298 atggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatata 17466369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 31187212 - 31187145
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  31187212 tatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 33509708 - 33509826
Alignment:
Q  4 gtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatatt 103  Q
    ||||||| ||||| ||||||| |||||| ||||||||||| |||||||||| ||| |||||||||| ||       ||| | |||||||||||||| |||    
T  33509708 gtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtatttttttaaaggatgtgccacatggcacatt 33509807  T
Q  104 ctaattggccaatggtata 122  Q
    |||||| | ||||| ||||    
T  33509808 ctaattagacaatgatata 33509826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37742750 - 37742871
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||| |||||| |||||| ||| || |||||||||||||||| |||  |||| |||||||||||||       |||  ||||||||| |||||     
T  37742750 atggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgtgccacgtggcac 37742849  T
Q  101 attctaattggccaatggtata 122  Q
    ||| ||||||| ||||||||||    
T  37742850 attataattgggcaatggtata 37742871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 42664702 - 42664769
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| | |||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  42664702 tatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 47186204 - 47186271
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||||||||| | |||||| ||| |||||||||||||||||||||  |||||||||||||    
T  47186204 tatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 50434097 - 50434147
Alignment:
Q  187 aagctctatgacttcatttgccactttgtttcttgtgcacttctgtaaaca 237  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  50434097 aagctctatgacttcatttgctactctgtttcttgtgcacttctttaaaca 50434147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 35094572 - 35094644
Alignment:
Q  2 tggtatataccattggccaattaaagtgtgt--cacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||||||||||||| | ||||| || || |  ||||||||||||||||||||||||| ||||||||||||||    
T  35094572 tggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatata 35094644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 34029433 - 34029366
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| |||||  |||| | |||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  34029433 tatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 39498803 - 39498744
Alignment:
Q  13 attggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||| |||||||||||||||||||| | |||||| ||||||||| |||||||| |||||    
T  39498803 attggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32319511 - 32319468
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatg 44  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||    
T  32319511 atggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10179909 - 10179868
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaa 42  Q
    ||||||||||||||||| |||||| |||||| ||||||||||    
T  10179909 atggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39570189 - 39570079
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||| || |||    
T  39570189 atggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacctgacat 39570090  T
Q  101 attctaattgg 111  Q
    |||||||||||    
T  39570089 attctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 33858681 - 33858563
Alignment:
Q  4 gtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatatt 103  Q
    ||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||       ||| |||||||||| || || |||    
T  33858681 gtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacatt 33858582  T
Q  104 ctaattggccaatggtata 122  Q
    |||||||| ||||||||||    
T  33858581 ctaattgggcaatggtata 33858563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11607680 - 11607559
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||       ||| ||||||||||  | ||     
T  11607680 atggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtgccacgggccac 11607581  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||| ||||||||||    
T  11607580 attctaattggacaatggtata 11607559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19357407 - 19357336
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||    
T  19357407 atggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata 19357336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1826284 - 1826355
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||| || ||| |||||||||||||    
T  1826284 atggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatata 1826355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 33271643 - 33271760
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattc 104  Q
    |||||| ||||||||||||| ||||||||| ||| ||||||||||| ||||||| |||||||||||||       ||| | || ||||| ||||| ||||    
T  33271643 tatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgccacgtggcacattc 33271742  T
Q  105 taattggccaatggtata 122  Q
    ||||||| |||| |||||    
T  33271743 taattgggcaatagtata 33271760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 29989991 - 29990058
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  29989991 tatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 42148203 - 42148292
Alignment:
Q  33 cacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattctaattggccaatggtata 122  Q
    ||||||||||||||||||||||||||||||||||||||||       ||| ||||| |||| | ||| ||||||||||  ||||||||||    
T  42148203 cacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtata 42148292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9827813 - 9827884
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||||| || | |||||| |||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  9827813 atggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 13015410 - 13015477
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| | |||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  13015410 tatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 38010756 - 38010689
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||||||||| | |||||| ||| |||||||||||||||||||||  |||||||||||||    
T  38010756 tatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 13478187 - 13478120
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| | |||||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  13478187 tatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 13086782 - 13086848
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatat 71  Q
    |||||| ||||| ||||| | |||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  13086782 tatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 37881191 - 37881237
Alignment:
Q  26 agtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  37881191 agtgtgccacataccaatgttactttataaatattttatttgatata 37881237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 21260823 - 21260929
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattc 104  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||| ||||    
T  21260823 tatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtgccacatggcacattc 21260922  T
Q  105 taattgg 111  Q
    |||||||    
T  21260923 taattgg 21260929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 33249520 - 33249411
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||       ||| ||||||||||||||||     
T  33249520 atggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcac 33249421  T
Q  101 attctaattg 110  Q
    | ||||||||    
T  33249420 aatctaattg 33249411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12473729 - 12473850
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||       ||| |||||| |||||| ||     
T  12473729 atggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtggcacatgacac 12473828  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||  ||||||||||    
T  12473829 attctaattgagcaatggtata 12473850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 12528138 - 12528259
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||       ||| |||||| |||||| ||     
T  12528138 atggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtggcacatgacac 12528237  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||  ||||||||||    
T  12528238 attctaattgagcaatggtata 12528259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 35869717 - 35869596
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||| ||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||       ||| |||||||||| || ||     
T  35869717 atggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatacttttttaaagggtgtgccacgtgacac 35869618  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||  ||||||||||    
T  35869617 attctaattgaacaatggtata 35869596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 52910191 - 52910126
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgata 70  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  52910191 tatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22343362 - 22343471
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||| ||||| ||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||       ||| | ||||||||||| ||     
T  22343362 atggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatattattttaaaggatgtgccacatgacac 22343461  T
Q  101 attctaattg 110  Q
    ||||||||||    
T  22343462 attctaattg 22343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 52012807 - 52012874
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  52012807 tatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 34829225 - 34829172
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatg 58  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  34829225 tatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatg 34829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 1796163 - 1796222
Alignment:
Q  7 tataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttattt 66  Q
    |||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgttactttataaatgttttattt 1796222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 49999723 - 49999663
Alignment:
Q  12 cattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||||||    
T  49999723 cattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 51811951 - 51812060
Alignment:
Q  13 attggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattctaattggc 112  Q
    |||||||||||| ||| || ||||||||||||||||||||||||| |||| |||||||||       ||| |||||||||  || || |||||||||||     
T  51811951 attggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatatttttttaaagggtgtgccatgtgacacattctaattgga 51812050  T
Q  113 caatggtata 122  Q
     |||||||||    
T  51812051 taatggtata 51812060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55590507 - 55590559
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttat 53  Q
    |||||||||| |||||  |||||| ||||||||||||||||||||||||||||    
T  55590507 atggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 9799482 - 9799438
Alignment:
Q  28 tgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||    
T  9799482 tgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 33174581 - 33174611
Alignment:
Q  42 atgttactttataaatgttttatttgatata 72  Q
    |||||||||||||||||||||||||||||||    
T  33174581 atgttactttataaatgttttatttgatata 33174611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 46719959 - 46720023
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgat 69  Q
    |||||| ||||| ||||| | |||||| ||| ||| |||||||||||||||||  ||||||||||    
T  46719959 tatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34392227 - 34392106
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||       ||| ||||||||||||||||     
T  34392227 atggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatatttttttaaagggtgtgccacatggcac 34392128  T
Q  101 attctaattggccaatggtata 122  Q
    | ||||||||| ||||||||||    
T  34392127 aatctaattggacaatggtata 34392106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21603984 - 21604055
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  21603984 atggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 23863937 - 23863828
Alignment:
Q  13 attggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattctaattggc 112  Q
    ||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||       ||| |||||||||||||||| |||||||||||     
T  23863937 attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcacattctaattgga 23863838  T
Q  113 caatggtata 122  Q
    ||||| ||||    
T  23863837 caatgatata 23863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7381717 - 7381788
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||  |||||||||||||    
T  7381717 atggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata 7381788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 37358063 - 37357997
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatat 71  Q
    |||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  37358063 tatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatat 37357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 41095926 - 41095811
Alignment:
Q  7 tataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattcta 106  Q
    ||||| ||||| |||||| ||||   |||||||||||||||||||||||||| ||||||||||| |       ||||||| |||||||||||| |  |||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  107 attggccaatggtata 122  Q
    | ||||||||||||||    
T  41095826 aatggccaatggtata 41095811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 4779613 - 4779731
Alignment:
Q  4 gtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatatt 103  Q
    |||||||||||||  || ||| |||||| | |||| ||||||||||||||||||  |||||||||||||       ||| | |||| ||| || || |||    
T  4779613 gtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgacacatt 4779712  T
Q  104 ctaattggccaatggtata 122  Q
    |||||||| ||||||||||    
T  4779713 ctaattggacaatggtata 4779731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 41179705 - 41179588
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattc 104  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||       ||  | |||||||||||||| ||||    
T  41179705 tatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatatttttttaatggatgtgccacatggcacattc 41179606  T
Q  105 taattggccaatggtata 122  Q
    ||||||| ||||||||||    
T  41179605 taattgggcaatggtata 41179588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 4708437 - 4708333
Alignment:
Q  17 gccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattctaattggccaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||| ||||| ||||||||| | ||||    
T  4708437 gccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaagggtgtgccacgtggcacattctaattaggcaat 4708338  T
Q  117 ggtat 121  Q
    |||||    
T  4708337 ggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 24337976 - 24337855
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||| || |||||| |||||| || ||||||||||||||||||| ||| |||||||||||||       ||| |||||||||||| |||     
T  24337976 atggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatatttttaaagggtgtgccacatagcac 24337877  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||| ||||||||||    
T  24337876 attctaattggacaatggtata 24337855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 11254142 - 11254053
Alignment:
Q  33 cacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattctaattggccaatggtata 122  Q
    ||||||||||||||||||||||||||||||||||||||||       ||| |||||||||| || || ||||||| ||  ||||||||||    
T  11254142 cacctaccaatgttactttataaatgttttatttgatatacatttttaaagggtgtgccacgtgacacattctaactgagcaatggtata 11254053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 32825975 - 32825910
Alignment:
Q  7 tataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||||||||||| ||| |||||| || |||||||| ||||||  ||||||||||||||||    
T  32825975 tataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatata 32825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 1514864 - 1514899
Alignment:
Q  37 taccaatgttactttataaatgttttatttgatata 72  Q
    ||||||||||||||||||||||||||||||||||||    
T  1514864 taccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18168410 - 18168481
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||| |||||  |||||| |||||  ||||||||||| |||||||||||||  |||||||||||||    
T  18168410 atggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18631967 - 18632038
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||| |||||  |||||| |||||  ||||||||||| |||||||||||||  |||||||||||||    
T  18631967 atggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 35341565 - 35341682
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattc 104  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||       ||| |||||||||| || || ||||    
T  35341565 tatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacattc 35341664  T
Q  105 taattggccaatggtata 122  Q
    ||||||| ||||| ||||    
T  35341665 taattggacaatgatata 35341682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 48250183 - 48250249
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatat 71  Q
    |||||| |||||| |||||| |||||| |||||||||||||||||||||| ||| ||||||||||||    
T  48250183 tatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat 48250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40893188 - 40893116
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatg-ttttatttgatata 72  Q
    ||||||||||||||||| |||||| | ||| ||| ||| ||||||||||||||||||| ||||||||||||||    
T  40893188 atggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 48072418 - 48072533
Alignment:
Q  7 tataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattcta 106  Q
    ||||||||||  |||||| |||||| ||| |  |||||||| ||||||||| ||||||||||| ||       ||| |||||||||| ||||| ||||||    
T  48072418 tataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtatttttttaaagggtgtgccacgtggcacattcta 48072517  T
Q  107 attggccaatggtata 122  Q
    ||||| ||||||||||    
T  48072518 attgggcaatggtata 48072533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 31307016 - 31306951
Alignment:
Q  5 tatataccattggccaatt-aaagtgtgtcacctaccaatgttactttataaatgttttatttgat 69  Q
    |||||| ||||| |||||| ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  31307016 tatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 32694712 - 32694595
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattc 104  Q
    |||||||||||||  ||||| |||||  || ||| ||||||||||||||||||  |||||||||||||       ||| |||||||||| || || ||||    
T  32694712 tatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgacacattc 32694613  T
Q  105 taattggccaatggtata 122  Q
    ||||| | ||||||||||    
T  32694612 taattaggcaatggtata 32694595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 40856481 - 40856524
Alignment:
Q  26 agtgtgtcacctaccaatgttactttataaatgttttatttgat 69  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  40856481 agtgtgtcacctaccaatgttattttatagatgttttatttgat 40856524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 23178469 - 23178519
Alignment:
Q  22 ttaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||| |||||||| || |||||||| ||||||||||||||||| ||||||    
T  23178469 ttaaaatgtgtcacatatcaatgttattttataaatgttttattcgatata 23178519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 29119470 - 29119349
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||||||||| |||||| |||||| || |||||||||||| ||| |||||||||||||       ||| ||||||||||||||||     
T  29119470 atggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatatttttttaaagggtgtgccacatggcac 29119371  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||| |||| |||||    
T  29119370 attctaattgggcaattgtata 29119349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25161334 - 25161402
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgat 69  Q
    |||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  25161334 atggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 32676161 - 32676282
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||||||||| | ||   |||||||||||||||||||||||||| |||||||||||||       |||   ||||||||||||||     
T  32676161 atggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatatttttttaaagcatgtgccacatggcac 32676260  T
Q  101 attctaattggccaatggtata 122  Q
    | ||||||||| ||||||||||    
T  32676261 aatctaattggacaatggtata 32676282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8462153 - 8462274
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||| |||||  |||||| |||||| ||||||||||||||| |||||||||||||||||| |||||       ||| || ||||||| || ||     
T  8462153 atggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgtgccacgtgacac 8462252  T
Q  101 attctaattggccaatggtata 122  Q
    ||| ||||||| ||||||||||    
T  8462253 attttaattggacaatggtata 8462274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 8809782 - 8809715
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||    
T  8809782 tatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2569062 - 2569133
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||||||| |||| |||||||| |||||| |||||||||||||||| |||  |||| |||||||||||||    
T  2569062 atggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata 2569133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttga 68  Q
    |||||| ||||| ||||||| |||||   |||||||||||||||||||||||||||||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 8555471 - 8555522
Alignment:
Q  18 ccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgat 69  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  8555471 ccaattaaaatgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  6 atataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1211990 - 1211869
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    |||||||||||||||||| |||||  ||||| |||||  ||||||||||||||  ||| |||||||||||||       ||| |||||||||| |||||     
T  1211990 atggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttttttaaagggtgtgccacgtggcac 1211891  T
Q  101 attctaattggccaatggtata 122  Q
    |||||||| || ||||||||||    
T  1211890 attctaatggggcaatggtata 1211869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5404022 - 5403901
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcat 100  Q
    ||||||||||  ||||| || ||| ||| || |||||||||||||||||||||| |||||||||||||||||       ||| || ||  |||||| ||     
T  5404022 atggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatatttttttaaagggcgtatcacatgacac 5403923  T
Q  101 attctaattggccaatggtata 122  Q
    ||||||||||| ||||||||||    
T  5403922 attctaattggacaatggtata 5403901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 34245596 - 34245663
Alignment:
Q  5 tatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    |||||| ||||| ||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  34245596 tatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 32644979 - 32644862
Alignment:
Q  4 gtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatatt 103  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||  |||||||| ||||       ||| |||||||||||||  | | |    
T  32644979 gtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgttatatttttttaaagggtgtgccacatgatacaat 32644881  T
Q  104 ctaattggccaatggtata 122  Q
    |||||||  ||||||||||    
T  32644880 ctaattgaacaatggtata 32644862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34219 - 34290
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 72  Q
    ||||||||||  |||||||||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  34219 atggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata 34290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 11251 - 11340
Alignment:
Q  33 cacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaaggtgtgccacatggcatattctaattggccaatggtata 122  Q
    ||||||||||||||||||||||||||||||||||||||||       ||| |||||||||| || || ||||||| ||  ||||||||||    
T  11251 cacctaccaatgttactttataaatgttttatttgatatacatttttaaagggtgtgccacgtgacacattctaactgagcaatggtata 11340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 73096 - 73168
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatg-ttttatttgatata 72  Q
    ||||||||||||||||| |||||| | ||| ||| ||| ||||||||||||||||||| ||||||||||||||    
T  73096 atggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13152 - 13030
Alignment:
Q  1 atggtatataccattggccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatannnnnnnaaaagg-tgtgccacatggca 99  Q
    |||||||||||||||||| |||||  ||||| |||||  ||||||||||||||  ||| |||||||||||||       ||| || |||||||| |||||    
T  13152 atggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatatttttttaaagggttgtgccacgtggca 13053  T
Q  100 tattctaattggccaatggtata 122  Q
     |||||||| || ||||||||||    
T  13052 cattctaatggggcaatggtata 13030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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