View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_high_19 (Length: 248)
Name: NF5111_high_19
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 44569632 - 44569796
Alignment:
| Q |
19 |
catcacccattgtttgaagatttaggcaaccacagagtgacaaaacttgcaaacttataagtttgccaattgactggggaggtattttgattttgcggta |
118 |
Q |
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| T |
44569632 |
catcaccgattgtttgaagatttaggcaaccacaaagtgacaaaacttgcaaacttatgagtttgccaattgactggggaggtattttgattttgcggtt |
44569731 |
T |
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| Q |
119 |
atatgagaggttggcaacacgcaggtgttctaatttagcaattgaattaggcaaagtcattaatg |
183 |
Q |
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| T |
44569732 |
atatgagaggttggcaacacgaaggtgttctaatttagcaattgaattaggcagagtcattaatg |
44569796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 44569807 - 44569850
Alignment:
| Q |
205 |
attgtaagtatttgttttttgatccatttctccaacaaaatttc |
248 |
Q |
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| T |
44569807 |
attgtaagtatttattttttgatccagttctccaacaaaatttc |
44569850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 35951486 - 35951552
Alignment:
| Q |
137 |
acgcaggtgttctaatttagcaattgaattaggcaaagtcattaatgaagaatcacttaaatctaaa |
203 |
Q |
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| T |
35951486 |
acgcaggtgctctaattttgtaattgaattgggcagagtttcaaatgaagaatcacttaaatctaaa |
35951552 |
T |
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