View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5111_high_23 (Length: 223)
Name: NF5111_high_23
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 27764882 - 27765040
Alignment:
| Q |
43 |
ataacctaatgccatggtggtgtgcttgaccgtgtcaacatcacctccaaacctcaatgagggtagaaggccaagtccttgagtccaaggcccaataagg |
142 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764882 |
ataacctcatgtcatggtggtgcgcttgaccgtgtcaacatcacctccaaacctcaatgagggtagaaggccaagtccttgagtccaaggccca------ |
27764975 |
T |
|
| Q |
143 |
cacataaggcaaaacacataccacctatgacattgaagttgtgcatcgagtaataaagccttgagagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27764976 |
---ataaggcaaaacacataccacctatgacattgaagttgtgtatcgagtaataaagccttgagagt |
27765040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University