View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5111_high_26 (Length: 214)
Name: NF5111_high_26
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 42216031 - 42215845
Alignment:
| Q |
20 |
actcgaagaagcgatggatggtaacctacaccaaacacgtcaaacagaaacgcaaagtctaccaagacggattcctagttctcaacgtttccactcgcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42216031 |
actcgaagaagcgatggatggtaacctacaccaaacacgtcaaacagaaacgcaaagtctaccaagacggattcctagttctcaacgtttccactcgcaa |
42215932 |
T |
|
| Q |
120 |
ggttcattttctctctatctacccctttcacacttttcaattttctaaatcaaccgtttattcgtatccgaaatcaaaatctatatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42215931 |
ggttcattttctctctatctacccctttcacactcttcaattttctaaatcaaccgtttattcgtatccgaaatcaaaatcgatatt |
42215845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University