View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111_high_5 (Length: 587)

Name: NF5111_high_5
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111_high_5
NF5111_high_5
[»] chr3 (2 HSPs)
chr3 (63-587)||(47425777-47426306)
chr3 (274-397)||(50432185-50432309)


Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 63 - 587
Target Start/End: Complemental strand, 47426306 - 47425777
Alignment:
Q  63 aagaaaaactaaattttatttgttgtgtctatattaattattcgtctctacacatgacacgcccttcaaacacactgctaaaagtatacggtactacaaa 162  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426306 aagaaaaactaaattttatttgttgtgtctatattaactattcgtctctacacatgacacgcccttcaaacacactgctaaaagtatacggtactacaaa 47426207  T
Q  163 cccgatatgctaaccaagacaccaagtacgcatcaagtgtctaaaagatcaagtaataagaaatccagtgccatttactaatatattaaggcaaggcttg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47426206 cccgatatgctaaccaagacaccaagtacgcatcaagtgtctaaaagatcaagtaataagaaatccaatgccatttactaatatattaaggcaaggcttg 47426107  T
Q  263 tgttgtgtctcacaaatatgaacaaccaaattacatatgatatcctttttacatttgattagtatgacatc--attcggcacaatgaatttatagcaact 360  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  47426106 tgttgtgtctcacaaatatgaacaaccaaattacgtatgatatcctttttacatttgattagtatgacatcatattcggcacaatgaatttatagcaact 47426007  T
Q  361 tccggctaacataatcgtccaaatctggagaattaaaaaatttaaatacctagtgagaaaaggctttaatatatgtttttctagttttggctttacacta 460  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47426006 tccagctaacataatcgtccaaatctggagaattaaaaaatttaaatacctagtgagaaaaggctttaatatatgtttttctagttttggctttatacta 47425907  T
Q  461 ct-tac--aatttatagccctagattgataggcattgaacaatctattccttcccacttatgaagtttcgaatatagtacatccttatttgtgtggtccg 557  Q
    || | |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47425906 ctattccttatttatagccctagattgataggcattgaacaatctattccttcccacttatgaagtttcgaatatagtacatccttatttgtgtggtccg 47425807  T
Q  558 gcagtttaaattatactgctgatgtgattt 587  Q
    ||||||||||||||||| ||||||||||||    
T  47425806 gcagtttaaattatactcctgatgtgattt 47425777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 50432309 - 50432185
Alignment:
Q  274 acaaatatgaacaaccaaattacatatgatatcctttttacatttga-ttagtatgacatcattcggcacaatgaatttatagcaacttccggctaacat 372  Q
    ||||||||||| ||||||||| |  |||||||||||  || |||| | ||||||||||||| ||| |||||||||||||||||||| |||| || || ||    
T  50432309 acaaatatgaagaaccaaatttcgcatgatatccttcatatattttaattagtatgacatcgttcagcacaatgaatttatagcaatttccagccaatat 50432210  T
Q  373 aatcgtccaaatctggagaattaaa 397  Q
    ||| ||  |||| |||| |||||||    
T  50432209 aatagtttaaatatggaaaattaaa 50432185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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