View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5111_low_10 (Length: 388)
Name: NF5111_low_10
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 38918587 - 38918383
Alignment:
| Q |
7 |
tagattatacttgaccagttttataagttttcttattagccacgataattaacatttggctatagcataaggaagcacagaaaattacataatttattta |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
38918587 |
tagattagacttgaccagttttataagttttcttattagccacgataattaacattaggctatagcataaggaagcacagaaaattacatattttaatta |
38918488 |
T |
|
| Q |
107 |
atatcagcacagctgcatgcatgtacttattaccattaggattttatttgatatatttcaacgtatgtatctatcttgacttctactcgatattgtcgct |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38918487 |
atatcagcacagctgcatgcatgtactaattaccattaggattttatttgatatatttcaacgtatgtatctatcttgacttctactcgatattgtcgct |
38918388 |
T |
|
| Q |
207 |
tgctc |
211 |
Q |
| |
|
||||| |
|
|
| T |
38918387 |
tgctc |
38918383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 249 - 372
Target Start/End: Complemental strand, 38918345 - 38918233
Alignment:
| Q |
249 |
tagatgtatgtaacctgatctaaggattacttaagttaagggggttaggtttttacgtgttggggataccttttatttgtaagaaaattgacaatgagtt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38918345 |
tagatgtatgtaacctgatctaaggattacttaagttaagggggttaggtttttacgtg-----------ttttatttgtaagaaaattgacaatgagtt |
38918257 |
T |
|
| Q |
349 |
ctagctactactattagtatatat |
372 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38918256 |
ctagctactactattagtatatat |
38918233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University