View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111_low_11 (Length: 384)

Name: NF5111_low_11
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111_low_11
NF5111_low_11
[»] chr5 (6 HSPs)
chr5 (165-369)||(41100569-41100767)
chr5 (13-41)||(11313965-11313993)
chr5 (13-41)||(16528763-16528791)
chr5 (13-41)||(16528945-16528973)
chr5 (13-41)||(16529121-16529149)
chr5 (13-41)||(41093161-41093189)
[»] scaffold1155 (1 HSPs)
scaffold1155 (13-41)||(1040-1068)
[»] scaffold0345 (1 HSPs)
scaffold0345 (13-41)||(9149-9177)
[»] scaffold0105 (1 HSPs)
scaffold0105 (13-41)||(29803-29831)
[»] chr8 (9 HSPs)
chr8 (13-41)||(604420-604448)
chr8 (13-41)||(604767-604795)
chr8 (13-41)||(37197820-37197848)
chr8 (13-41)||(37198004-37198032)
chr8 (13-41)||(44429383-44429411)
chr8 (13-41)||(44430053-44430081)
chr8 (13-41)||(44430404-44430432)
chr8 (13-41)||(44433788-44433816)
chr8 (13-41)||(44434139-44434167)
[»] chr7 (1 HSPs)
chr7 (13-41)||(48641107-48641135)
[»] chr6 (1 HSPs)
chr6 (13-41)||(25068126-25068154)
[»] chr4 (1 HSPs)
chr4 (13-41)||(21585470-21585498)
[»] chr3 (3 HSPs)
chr3 (13-41)||(11454367-11454395)
chr3 (13-41)||(11454548-11454576)
chr3 (13-41)||(46451238-46451266)
[»] chr2 (5 HSPs)
chr2 (13-41)||(5001285-5001313)
chr2 (13-41)||(5001436-5001464)
chr2 (13-41)||(5012955-5012983)
chr2 (13-41)||(5013106-5013134)
chr2 (13-41)||(44543595-44543623)
[»] chr1 (3 HSPs)
chr1 (13-41)||(5428919-5428947)
chr1 (13-41)||(28950079-28950107)
chr1 (13-41)||(51113892-51113920)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 165 - 369
Target Start/End: Original strand, 41100569 - 41100767
Alignment:
Q  165 taaaaaatattatttatagagataaaacatatttttacttcttgatttatttaattttattgttaggaaactactctactgactggcagtacagtagtac 264  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41100569 taaaaaatattatttatagagataaaacatattttaactt---gatttatttaattttattgttagcaaactactctactgactggcagtacagtagtac 41100665  T
Q  265 tgcataattatctcccgcgtcttcgcttttttctcggcaaaaactcttttctttctttaaatggnnnnnnnnngaagaagaagtagaaaaacgtatattc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||         |||||||||||||||||||||||||||    
T  41100666 tgcataattatctcccgcgtcttcgcttttttctcggcaaaaactc--ttctttctttaaatgg-aaaaaaaagaagaagaagtagaaaaacgtatattc 41100762  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 11313993 - 11313965
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  11313993 aaaattaataaataaggataagtgtagaa 11313965  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 16528791 - 16528763
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  16528791 aaaattaataaataaggataagtgtagaa 16528763  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 16528973 - 16528945
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  16528973 aaaattaataaataaggataagtgtagaa 16528945  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 16529149 - 16529121
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  16529149 aaaattaataaataaggataagtgtagaa 16529121  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 41093161 - 41093189
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  41093161 aaaattaataaataaggataagtgtagaa 41093189  T

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Target: scaffold1155 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 1040 - 1068
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  1040 aaaattaataaataaggataagtgtagaa 1068  T

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Target: scaffold0345 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 9177 - 9149
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  9177 aaaattaataaataaggataagtgtagaa 9149  T

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Target: scaffold0105 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 29803 - 29831
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  29803 aaaattaataaataaggataagtgtagaa 29831  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 604420 - 604448
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  604420 aaaattaataaataaggataagtgtagaa 604448  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 604767 - 604795
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  604767 aaaattaataaataaggataagtgtagaa 604795  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 37197820 - 37197848
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  37197820 aaaattaataaataaggataagtgtagaa 37197848  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 37198004 - 37198032
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  37198004 aaaattaataaataaggataagtgtagaa 37198032  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44429411 - 44429383
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44429411 aaaattaataaataaggataagtgtagaa 44429383  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44430081 - 44430053
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44430081 aaaattaataaataaggataagtgtagaa 44430053  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44430432 - 44430404
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44430432 aaaattaataaataaggataagtgtagaa 44430404  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44433816 - 44433788
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44433816 aaaattaataaataaggataagtgtagaa 44433788  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44434167 - 44434139
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44434167 aaaattaataaataaggataagtgtagaa 44434139  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 48641107 - 48641135
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  48641107 aaaattaataaataaggataagtgtagaa 48641135  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 25068154 - 25068126
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  25068154 aaaattaataaataaggataagtgtagaa 25068126  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 21585470 - 21585498
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  21585470 aaaattaataaataaggataagtgtagaa 21585498  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 11454395 - 11454367
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  11454395 aaaattaataaataaggataagtgtagaa 11454367  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 11454576 - 11454548
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  11454576 aaaattaataaataaggataagtgtagaa 11454548  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 46451266 - 46451238
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  46451266 aaaattaataaataaggataagtgtagaa 46451238  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5001285 - 5001313
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5001285 aaaattaataaataaggataagtgtagaa 5001313  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5001436 - 5001464
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5001436 aaaattaataaataaggataagtgtagaa 5001464  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5012955 - 5012983
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5012955 aaaattaataaataaggataagtgtagaa 5012983  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5013106 - 5013134
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5013106 aaaattaataaataaggataagtgtagaa 5013134  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 44543595 - 44543623
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  44543595 aaaattaataaataaggataagtgtagaa 44543623  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 5428947 - 5428919
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  5428947 aaaattaataaataaggataagtgtagaa 5428919  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 28950079 - 28950107
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  28950079 aaaattaataaataaggataagtgtagaa 28950107  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 51113920 - 51113892
Alignment:
Q  13 aaaattaataaataaggataagtgtagaa 41  Q
    |||||||||||||||||||||||||||||    
T  51113920 aaaattaataaataaggataagtgtagaa 51113892  T

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