View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111_low_15 (Length: 350)

Name: NF5111_low_15
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111_low_15
NF5111_low_15
[»] chr7 (2 HSPs)
chr7 (176-331)||(44570017-44570172)
chr7 (178-225)||(21774052-21774099)
[»] chr3 (1 HSPs)
chr3 (207-313)||(51940760-51940868)
[»] chr4 (2 HSPs)
chr4 (175-217)||(42845295-42845337)
chr4 (181-225)||(26593979-26594022)
[»] chr1 (4 HSPs)
chr1 (176-215)||(29201198-29201237)
chr1 (252-286)||(39208956-39208990)
chr1 (252-286)||(50446061-50446095)
chr1 (232-284)||(23314928-23314980)
[»] chr6 (1 HSPs)
chr6 (227-297)||(22501893-22501963)
[»] chr5 (2 HSPs)
chr5 (175-225)||(11777410-11777460)
chr5 (227-297)||(42838141-42838211)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 176 - 331
Target Start/End: Complemental strand, 44570172 - 44570017
Alignment:
Q  176 aaggaaaatgattcataaacaccctttagccataccacttttgtacacactcccacgtggatggcagctttgaaaatttgtcaaaaaacaaggggtaaaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44570172 aaggaaaatgattcataaacaccctttagccataccacttttgtacacactcccacgtggatggcagctttgaaaatttgtcaaaaaacaagggataaaa 44570073  T
Q  276 ttggaatttcacatgccctttttttctcaccctcacaaaccttgtctctgttcacg 331  Q
    |||| |||||||| |||||||| ||||||| |||||||||||||||| ||||||||    
T  44570072 ttgggatttcacaagcccttttgttctcacactcacaaaccttgtctttgttcacg 44570017  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 21774052 - 21774099
Alignment:
Q  178 ggaaaatgattcataaacaccctttagccataccacttttgtacacac 225  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||    
T  21774052 ggaaaatgattcataaacacccttgtcccataccacttttgtacacac 21774099  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 51940760 - 51940868
Alignment:
Q  207 ataccacttttgtacacact--cccacgtggatggcagctttgaaaatttgtcaaaaaacaaggggtaaaattggaatttcacatgccctttttttctca 304  Q
    |||||||| || ||||||||  |||| ||||||||||| |||| ||||||||||||||||||||| | ||||||| ||||||   ||||||||||| |||    
T  51940760 ataccactcttatacacacttgcccatgtggatggcagttttgtaaatttgtcaaaaaacaagggctgaaattgggatttcagtagccctttttttttca 51940859  T
Q  305 ccctcacaa 313  Q
    |||||||||    
T  51940860 ccctcacaa 51940868  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 42845295 - 42845337
Alignment:
Q  175 aaaggaaaatgattcataaacaccctttagccataccactttt 217  Q
    ||||||||||||||||||||||||||||  |||||||||||||    
T  42845295 aaaggaaaatgattcataaacacccttttcccataccactttt 42845337  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 26593979 - 26594022
Alignment:
Q  181 aaatgattcataaacaccctttagccataccacttttgtacacac 225  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||    
T  26593979 aaatgattcataaacacccttt-tccataccacttttatacacac 26594022  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 29201237 - 29201198
Alignment:
Q  176 aaggaaaatgattcataaacaccctttagccataccactt 215  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  29201237 aaggaaaatgattcataaacaccctttttccataccactt 29201198  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 39208990 - 39208956
Alignment:
Q  252 tttgtcaaaaaacaaggggtaaaattggaatttca 286  Q
    ||||| |||||||||||||||||||||||||||||    
T  39208990 tttgttaaaaaacaaggggtaaaattggaatttca 39208956  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 50446061 - 50446095
Alignment:
Q  252 tttgtcaaaaaacaaggggtaaaattggaatttca 286  Q
    ||||| |||||||||||||||||||||||||||||    
T  50446061 tttgttaaaaaacaaggggtaaaattggaatttca 50446095  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 23314928 - 23314980
Alignment:
Q  232 gtggatggcagctttgaaaatttgtcaaaaaacaaggggtaaaattggaattt 284  Q
    |||||||||| ||||| || ||||| ||||| ||| |||||||||||||||||    
T  23314928 gtggatggcatctttgtaattttgttaaaaagcaaagggtaaaattggaattt 23314980  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 22501893 - 22501963
Alignment:
Q  227 cccacgtggatggcagctttgaaaatttgtcaaaaaacaaggggtaaaattggaatttcacatgccctttt 297  Q
    |||| |||||||||||||||| || ||||| |||||  ||||||||||||||  ||||||| |||| ||||    
T  22501893 cccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttcacgtgccatttt 22501963  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 11777410 - 11777460
Alignment:
Q  175 aaaggaaaatgattcataaacaccctttagccataccacttttgtacacac 225  Q
    |||||||||||||||||| ||||||||    ||||||||||||||||||||    
T  11777410 aaaggaaaatgattcatagacacccttgtctcataccacttttgtacacac 11777460  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 42838141 - 42838211
Alignment:
Q  227 cccacgtggatggcagctttgaaaatttgtcaaaaaacaaggggtaaaattggaatttcacatgccctttt 297  Q
    |||| |||||||||||||||| || ||||| |||||  ||||||||||||||  ||||||| |||| ||||    
T  42838141 cccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttcacgtgccatttt 42838211  T

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