View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111_low_17 (Length: 331)

Name: NF5111_low_17
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111_low_17
NF5111_low_17
[»] scaffold0014 (2 HSPs)
scaffold0014 (148-314)||(73213-73379)
scaffold0014 (24-130)||(73430-73536)
[»] chr6 (4 HSPs)
chr6 (17-131)||(28541947-28542060)
chr6 (17-130)||(1947397-1947509)
chr6 (17-93)||(6614884-6614960)
chr6 (17-124)||(22616866-22616970)
[»] chr7 (13 HSPs)
chr7 (17-130)||(34111837-34111949)
chr7 (17-132)||(32854076-32854190)
chr7 (17-130)||(33901241-33901353)
chr7 (17-130)||(33474331-33474443)
chr7 (61-129)||(47663231-47663298)
chr7 (25-125)||(675121-675220)
chr7 (62-130)||(5082486-5082553)
chr7 (73-130)||(21577704-21577759)
chr7 (35-92)||(32204211-32204268)
chr7 (17-130)||(48705623-48705735)
chr7 (40-92)||(35239815-35239867)
chr7 (17-93)||(36856573-36856649)
chr7 (21-125)||(38903614-38903717)
[»] chr1 (10 HSPs)
chr1 (17-132)||(39323394-39323508)
chr1 (17-122)||(894930-895034)
chr1 (17-130)||(7785048-7785160)
chr1 (17-130)||(12482379-12482490)
chr1 (43-130)||(30742518-30742605)
chr1 (17-131)||(31366896-31367008)
chr1 (17-130)||(32268001-32268113)
chr1 (21-82)||(32512108-32512169)
chr1 (35-92)||(41898879-41898936)
chr1 (17-130)||(51046646-51046758)
[»] chr2 (7 HSPs)
chr2 (17-130)||(2958474-2958586)
chr2 (17-130)||(10740401-10740513)
chr2 (61-130)||(43106785-43106854)
chr2 (27-98)||(31167617-31167688)
chr2 (71-130)||(21362410-21362468)
chr2 (17-91)||(30831648-30831722)
chr2 (29-130)||(9991457-9991557)
[»] chr3 (13 HSPs)
chr3 (18-130)||(9189214-9189325)
chr3 (20-130)||(32070641-32070748)
chr3 (17-130)||(6822806-6822919)
chr3 (17-84)||(32385610-32385677)
chr3 (17-113)||(21195284-21195379)
chr3 (36-130)||(33641244-33641337)
chr3 (17-130)||(15502641-15502753)
chr3 (17-131)||(23528053-23528165)
chr3 (61-130)||(15005798-15005866)
chr3 (17-130)||(36051973-36052085)
chr3 (17-130)||(46055778-46055890)
chr3 (72-130)||(31378529-31378586)
chr3 (65-130)||(29454851-29454916)
[»] chr4 (14 HSPs)
chr4 (17-121)||(56268918-56269021)
chr4 (17-130)||(55465467-55465578)
chr4 (17-130)||(35498823-35498935)
chr4 (17-131)||(45257608-45257721)
chr4 (17-130)||(31463298-31463410)
chr4 (35-92)||(32584542-32584599)
chr4 (17-125)||(27628862-27628969)
chr4 (35-91)||(52341631-52341687)
chr4 (37-130)||(3180515-3180607)
chr4 (35-92)||(35511203-35511260)
chr4 (35-92)||(35675213-35675270)
chr4 (17-130)||(48604206-48604316)
chr4 (17-66)||(51581461-51581510)
chr4 (17-89)||(20435795-20435867)
[»] chr8 (7 HSPs)
chr8 (17-125)||(40058196-40058304)
chr8 (17-101)||(6237489-6237572)
chr8 (17-92)||(36054987-36055062)
chr8 (28-82)||(24286535-24286589)
chr8 (17-82)||(40451949-40452014)
chr8 (68-120)||(11799012-11799063)
chr8 (35-91)||(19389333-19389389)
[»] chr5 (5 HSPs)
chr5 (17-130)||(32522704-32522816)
chr5 (17-130)||(28782676-28782788)
chr5 (21-123)||(10317221-10317322)
chr5 (35-98)||(11594700-11594763)
chr5 (35-91)||(25017314-25017370)
[»] scaffold0169 (1 HSPs)
scaffold0169 (17-123)||(9013-9118)
[»] scaffold0045 (2 HSPs)
scaffold0045 (63-130)||(62629-62694)
scaffold0045 (63-130)||(69961-70026)


Alignment Details
Target: scaffold0014 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 148 - 314
Target Start/End: Complemental strand, 73379 - 73213
Alignment:
Q  148 gtacttacatatgttttaccggatcagttttaaaatacccttggagtatgggatcttagaagttgatctctcaattagagggagggacactcggtatgga 247  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  73379 gtacttacatatgttttacgagatcagttttaaaatacccttggagtatgggatcttagaatttgatctctcaattagagggagggacattcggtatgga 73280  T
Q  248 aacattcgttggatgtaacttatagaggatcgaaaaaatctaaataattctcgacagcttgtatcag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  73279 aacattcgttggatgtaacttatagaggatcgaaaaaatctaaataattctcgacagtttgtgtcag 73213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 73536 - 73430
Alignment:
Q  24 aaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactac 123  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  73536 aaaagaacaataattgaaatattgtgttggaaagtgataaaaagttatgaattcaactttttaaaagtttgaaaaattataattttcaatgtaaaactac 73437  T
Q  124 tattttt 130  Q
    |||||||    
T  73436 tattttt 73430  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 28542060 - 28541947
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  28542060 attggttaagagaacaataataaaaatattgtgttggaaagtagtaaaaagtgatgaattcaactttttaaaagtttg-aaaattgtagttttcaatgta 28541962  T
Q  117 aaactactatttttt 131  Q
    ||| |||||||||||    
T  28541961 aaattactatttttt 28541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 1947509 - 1947397
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||  |||||||||| | ||||||||| |  ||||||||| | ||||||||||| |||||| |  |||| ||||||||| ||||  |    
T  1947509 attggttaagagaacataaatagaaataatttgttggaaaatggtaaaaagtgttaaattcaactttctaaaag-tcaaaaagttgtaatttccaataca 1947411  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  1947410 aaactactactttt 1947397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 6614884 - 6614960
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagttt 93  Q
    ||||| |||| |||||| ||||||||| |||||||||||| | |||||||||| | || ||||||| | ||||||||    
T  6614884 attggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtggtcaaatcaacttgtaaaaagttt 6614960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 22616970 - 22616866
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||| ||||| ||||| |||||||||  ||||||||||| | |||||||||  | || ||||||| | |||||||| | |||||||  ||| |||||||    
T  22616970 attggataaaataacaaaaatagaaat--tgtgttggaaaatgataaaaagtagtcaaatcaacttataaaaagttt-ataaattgttgtttccaatgta 22616874  T
Q  117 aaactact 124  Q
    ||||||||    
T  22616873 aaactact 22616866  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 34111837 - 34111949
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||||||||||||||||||||||| ||||  |||||| ||| | |||||||||||||||||||| |||||||||||||||||||| |    
T  34111837 attggttaagagaacaataatagaaatattgtgttgggaagtggtaaaaaatgaaggattcaactttttaaaagttt-aaaaattgtaattttcaatgca 34111935  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  34111936 aaactactattttt 34111949  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 32854190 - 32854076
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| |||||||||||| ||||||| ||||||||| |  ||||| ||||||||||||||||||||||||||| ||||||| || ||| ||| ||     
T  32854190 attggttaagagaacaataataaaaatattatgttggaaaatagtaaaatgtgatgaattcaactttttaaaagttt-aaaaattatagtttccaacgtc 32854092  T
Q  117 aaactactatttttta 132  Q
    |||||||| |||||||    
T  32854091 aaactactctttttta 32854076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 33901353 - 33901241
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| |||||||||||||||||||| | |||||||||  ||||| |||||||| ||||||||| ||||||||| ||||||||| ||| |||| ||    
T  33901353 attggttaatagaacaataatagaaatattatcttggaaagtggtaaaatgtgatgaactcaacttttaaaaagtttg-aaaattgtagtttccaattta 33901255  T
Q  117 aaactactattttt 130  Q
    ||| || |||||||    
T  33901254 aaattattattttt 33901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 33474443 - 33474331
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||| |||||||||| | ||||| ||| |||| ||||||| ||||||||||||| |||||| |  |||| ||||||||||||||| |    
T  33474443 attggttaagagaacaaaaatagaaataatttgttgaaaaattatgaaaagtgttgaattcaactttctaaaag-tcaaaaagttgtaattttcaatgca 33474345  T
Q  117 aaactactattttt 130  Q
    ||| ||||||||||    
T  33474344 aaattactattttt 33474331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 47663298 - 47663231
Alignment:
Q  61 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactatttt 129  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||||||||  ||||||||||||||    
T  47663298 taaaaagtgatgaattaaactatttaaaagttt-aaaaattgtaattttcaatacaaaactactatttt 47663231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 675121 - 675220
Alignment:
Q  25 aaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactact 124  Q
    |||||| || ||||||||| |||||||||||| | |||||||||| | || ||||||  | |||||||| | |||||||  ||||||||||||| |||||    
T  675121 aaagaaaaaaaatagaaattttgtgttggaaaataataaaaagtggtcaaatcaactagtaaaaagttt-ataaattgttgttttcaatgtaaagctact 675219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 5082553 - 5082486
Alignment:
Q  62 aaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    |||||||| |||||||||||||||||||| |  |||| ||||||||| ||||| |||||||||| ||||    
T  5082553 aaaaagtgttgaattcaactttttaaaag-tcaaaaagttgtaatttccaatgcaaaactactactttt 5082486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 21577704 - 21577759
Alignment:
Q  73 aattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    |||| ||||||||||||||||  ||||||||| ||| ||||||||||||| |||||||    
T  21577704 aatttaactttttaaaagttt--aaaattgtagtttccaatgtaaaactagtattttt 21577759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 32204268 - 32204211
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    |||||||||||||  ||| ||| | || |||||||||||||| |||||||||||||||    
T  32204268 aatagaaatattgcattgaaaaatgatgaaaagtgatgaatttaactttttaaaagtt 32204211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 48705735 - 48705623
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||| |||| ||||||  |||||||||| | ||||| ||| |  | ||||||| ||||||||||||| |||||| || |||| |||||||||  |||| |    
T  48705735 attgtttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaag-ttaaaaagttgtaatttctaatgca 48705637  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  48705636 aaactactactttt 48705623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 35239815 - 35239867
Alignment:
Q  40 aaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    |||||| |||||| ||| | |||||| |||||||||| |||||||||||||||    
T  35239815 aaatatggtgttgaaaaatgataaaacgtgatgaatttaactttttaaaagtt 35239867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 36856649 - 36856573
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagttt 93  Q
    ||||| |||| |||||| |||||||||  ||| || |||||| |||||||||||| || ||||||| | ||||||||    
T  36856649 attggataaaggaacaaaaatagaaattgtgtattagaaagtgataaaaagtgatcaagtcaacttgtaaaaagttt 36856573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 38903717 - 38903614
Alignment:
Q  21 gttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaac 120  Q
    ||||||||||||| |||| ||||||||||||  |||||  | |||| |||  ||||  ||||||||||||||| |||||||||| |||  |||| ||||     
T  38903717 gttaaaagaacaacaataaaaatattgtgttaaaaagtggttaaaaatgacaaattatactttttaaaagttt-aaaaattgtagtttcaaatgaaaaat 38903619  T
Q  121 tacta 125  Q
    |||||    
T  38903618 tacta 38903614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 39323508 - 39323394
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||||||||  |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||| |||  ||| ||    
T  39323508 attggttaagtgaacaataatagaaatattgtgttggaaagtggtaaaaagtgatgaattcaacattttaaaagtttg-aaaattgtagtttctaatata 39323410  T
Q  117 aaactactatttttta 132  Q
    ||||||||||||||||    
T  39323409 aaactactatttttta 39323394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 895034 - 894930
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| |||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  895034 attggttaagagaacagtaatagaaatattatgttggaaagttgtgaaaagtgatgaattcaactttttaaaagtttg-aaaattgtagtttccaatgta 894936  T
Q  117 aaacta 122  Q
    ||||||    
T  894935 aaacta 894930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 7785160 - 7785048
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| |||||||||||| |||||||||||| ||||    | ||||||||||||||||| |||| | ||||||| ||||||||| ||||||||| |    
T  7785160 attggttaagagaacaataataaaaatattgtgttagaaaccggtgaaaagtgatgaattcaatttttcataagtttg-aaaattgtagttttcaatgca 7785062  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  7785061 aaactactattttt 7785048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 12482379 - 12482490
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||| |||| |||||| |||| |||| |||||||||||| | |||||||||||| || ||||||| | ||||||||  ||||||||  |||| ||||||    
T  12482379 attggataaaggaacaaaaataaaaattttgtgttggaaaatgataaaaagtgatcaaatcaacttgtaaaaagttt--aaaattgttgtttttaatgta 12482476  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  12482477 aaactactaatttt 12482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 30742518 - 30742605
Alignment:
Q  43 tattgtgttggaaagttataaaaagtgatgaattcaac-tttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||||||||| |||||||||| |||| |||  ||||||| |||||||    
T  30742518 tattgtgttggaaagtggtaaaaagtaatgaattcaacttttttaaaagttt-aaaaattgtagtttttaatacaaaactattattttt 30742605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 31366896 - 31367008
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||| |||| ||||||| |||||||||||  |||| |||||| || ||||||| ||||||||| ||||||||||||  |||| || | |||| |||||||    
T  31366896 attgattaagagaacaaaaatagaaatatcatgttagaaagtgatgaaaagtggtgaattcaattttttaaaagtt--aaaattttttatttccaatgta 31366993  T
Q  117 aaactactatttttt 131  Q
    ||  |||||||||||    
T  31366994 aagttactatttttt 31367008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 32268113 - 32268001
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||| |||||||||||  |||| ||||| | ||||| ||| |  | ||||||| ||||||||||||| |||||||   |||||||||||||| ||| |||    
T  32268113 attgattaaaagaacataaataaaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaagtca-aaaaattgtaatttccaacgta 32268015  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  32268014 aaactactactttt 32268001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 32512169 - 32512108
Alignment:
Q  21 gttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 82  Q
    |||||| |||||| ||||||||| |||||||||||| | |||||||||||| || |||||||    
T  32512169 gttaaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtgatcaagtcaactt 32512108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 41898879 - 41898936
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    |||||||||||||| ||| ||| |  |||||||||||||||| |||||||||||||||    
T  41898879 aatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaaagtt 41898936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 51046646 - 51046758
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||  |||||||||| | ||||| ||| |  | ||||||| |||||||||||||||||||| |  |||| |||| |||| ||||| |    
T  51046646 attggttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaag-tcaaaaagttgtcatttccaatgca 51046744  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  51046745 aaactactactttt 51046758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 2958474 - 2958586
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||| ||||||||||||||||  |||||||||||||||||||  | |||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  2958474 attgtttaaaagaacaataatgaaaatattgtgttggaaagtggtgaaaagttatgaatttaactttttaaaagtttg-aaaattgtatttttcaatgta 2958572  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  2958573 aaactactattttt 2958586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 10740401 - 10740513
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||||||||| || |||||||| |||||||||||  | ||||  ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  10740401 attggttaaaggagcaataatataaatattgtgtgaggaagtggtaaaaagtgatgaattcaattttttaaaagttt-aaaaattgtaatcttcaatgta 10740499  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  10740500 aaactactattttt 10740513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 43106785 - 43106854
Alignment:
Q  61 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  43106785 taaaaagtgatcaatttaactttttaaaagtttgaaaaattgtagttatcaatgtaaaactactattttt 43106854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 31167688 - 31167617
Alignment:
Q  27 agaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa 98  Q
    |||||||||||| |||||||||||| |||| | || |||| ||||||||| |||||||||||||||||||||    
T  31167688 agaacaataataaaaatattgtgttagaaaatgatgaaaattgatgaatttaactttttaaaagtttgaaaa 31167617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 21362468 - 21362410
Alignment:
Q  71 tgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||||||||| |||||||||| ||| |||| |||| ||||||||| |||||||||||    
T  21362468 tgaattcaactttataaaagtttg-aaagttgttatttccaatgtaaatctactattttt 21362410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 30831722 - 30831648
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 91  Q
    ||||||||| | || || |||||||||||||  ||  ||| ||||||||| ||||||||| ||||||||||||||    
T  30831722 attggttaacaaaataaaaatagaaatattgcattaaaaaattataaaaaatgatgaatttaactttttaaaagt 30831648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 9991457 - 9991557
Alignment:
Q  29 aacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattt 128  Q
    ||||| ||||||||| |||| ||||||| | |||||||||  | || ||||||| | |||| ||| | |||||||  |||||||||||||||||||| ||    
T  9991457 aacaaaaatagaaattttgtattggaaaatgataaaaagtagtcaaatcaacttgtaaaaaattt-ataaattgttgttttcaatgtaaaactactaatt 9991555  T
Q  129 tt 130  Q
    ||    
T  9991556 tt 9991557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 9189325 - 9189214
Alignment:
Q  18 ttggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaa 117  Q
    ||||||||  ||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||| || || ||||||||| ||||| ||||||    
T  9189325 ttggttaagtgaacaataatagaaatattatgttggaaagtggtaaaaagtgatgaattcaactttttaaatgtgtg-aaaattgtagttttctatgtaa 9189227  T
Q  118 aactactattttt 130  Q
    |||||||||||||    
T  9189226 aactactattttt 9189214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 32070748 - 32070641
Alignment:
Q  20 ggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaa 119  Q
    |||||||||||||||||||  |||||||||||| |||||  | |||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||    
T  32070748 ggttaaaagaacaataata--aatattgtgttgaaaagtggtgaaaagtgatgaattcaactttttaaaagtttg-aaaattataatttttaatataaaa 32070652  T
Q  120 ctactattttt 130  Q
    |||||||||||    
T  32070651 ctactattttt 32070641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 6822806 - 6822919
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa--attgtaattttcaatg 114  Q
    ||||||||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||   | ||| |||||||||    
T  6822806 attggttaagagaacaataaaa--aatattgtgttggaaagtggtaaaaagtgatgaattcaactttttaaaagttttaaaattgtagtagttttcaatg 6822903  T
Q  115 taaaactactattttt 130  Q
    ||||| || |||||||    
T  6822904 taaaattattattttt 6822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 32385610 - 32385677
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttt 84  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  32385610 attggttaagagaacaataatagtaatattgtgttggaaagtaataaaaagtgatgaattcaagtttt 32385677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 21195284 - 21195379
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaat 113  Q
    |||||||||| |||||| |||||||||||  ||||||||||| || ||||||| |||||||||||||||||||| || ||||||||| |||| ||||    
T  21195284 attggttaaaggaacaaaaatagaaatatcttgttggaaagtgatgaaaagtggtgaattcaactttttaaaag-ttaaaaaattgttatttccaat 21195379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 33641337 - 33641244
Alignment:
Q  36 atagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||||||| ||||||||| |  | |||| |||| |||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||    
T  33641337 atagaaatattatgttggaaattggtgaaaaatgataaattcaactttttaaaagttt-taaaattgtagttttcaacgtaaaactactattttt 33641244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 15502641 - 15502753
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||| |||||||||| | ||||| ||| |  |||||| || |||||||||||||||||||| || |||||||||||||| ||||  |    
T  15502641 attggttaagagaacaaaaatagaaataatttgttgaaaaatggtaaaaaatgttgaattcaactttttaaaag-ttaaaaaattgtaatttccaataca 15502739  T
Q  117 aaactactattttt 130  Q
    ||||| ||||||||    
T  15502740 aaactgctattttt 15502753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 23528053 - 23528165
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||  ||||| | ||||||||||||||||  | |||| ||||||||||||||||||||||||||| ||||||||| ||| |||| ||    
T  23528053 attggttaagagaacacaaataggactattgtgttggaaagtggtgaaaa-tgatgaattcaactttttaaaagtttg-aaaattgtagtttccaatata 23528150  T
Q  117 aaactactatttttt 131  Q
     || || ||||||||    
T  23528151 gaaatattatttttt 23528165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 15005866 - 15005798
Alignment:
Q  61 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||||| ||||||||||||| ||||||||  |||||||||||||||||||| |||||||||| ||||    
T  15005866 taaaaagtgttgaattcaactttgtaaaagtta-aaaaattgtaattttcaatgcaaaactactactttt 15005798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 36051973 - 36052085
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| | | ||| |||||||||||| |||||| || | || |||||||  |||||  ||||||||||||||  || |||||| |||||||||| |    
T  36051973 attggttaagaaagcaaaaatagaaatattatgttgggaaatgatgaaaagtggagaatttcactttttaaaagtta-aacaattgttattttcaatgca 36052071  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  36052072 aaactactattttt 36052085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 46055778 - 46055890
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||| |||| |||||| ||||||||| |||||||||||| | |||||||||  | || ||||||| | ||||| || | |||||||  |||| ||||||    
T  46055778 attggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaag-ttaataaattgttgtttttaatgta 46055876  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  46055877 aaactactaatttt 46055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 31378529 - 31378586
Alignment:
Q  72 gaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    |||||||||||||||||||||| ||||||  |  |||||||||||||||||||| ||||    
T  31378529 gaattcaactttttaaaagttt-aaaaatcattgttttcaatgtaaaactactactttt 31378586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 29454916 - 29454851
Alignment:
Q  65 aagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||| ||||||||||||| |||||  || ||||||||| |||||||||| || || |||||||||    
T  29454916 aagtggtgaattcaactttataaaaagtttaaaaattgttattttcaatgcaagacaactattttt 29454851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 56269021 - 56268918
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||||||||||||||||||||||||||||| | || ||||||  ||||||||||| ||||||||||||| |||||||| ||||||||| ||| |||||||    
T  56269021 attggttaaaagaacaataatagaaatattatcttagaaagtggtaaaaagtgataaattcaacttttttaaagtttg-aaaattgtagtttccaatgta 56268923  T
Q  117 aaact 121  Q
    |||||    
T  56268922 aaact 56268918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 55465467 - 55465578
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||  |||||| ||||||||||||| ||||||||||||  ||||||||| |||  ||| ||    
T  55465467 attggttaagagatcaataatagaaatattgtgttgggaagtggtaaaaaatgatgaattcaacattttaaaagttt--aaaattgtagtttctaatata 55465564  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  55465565 aaactactattttt 55465578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 35498823 - 35498935
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||| |||| |||||||||||| |||||||||||||| ||    |||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||    
T  35498823 attgattaagagaacaataataaaaatattgtgttgggaataggtaaaaagtgatggattcaactttttaaatgttt-aaaaattgtagttttcaatgta 35498921  T
Q  117 aaactactattttt 130  Q
    |||||| |||||||    
T  35498922 aaactattattttt 35498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 45257608 - 45257721
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||  | ||||||| ||||||||||||||||||||  | ||||||| | |||| ||||| |    
T  45257608 attggttaagagaacaaaaatagaaatattttgttgggaagtgttgaaaagtggtgaattcaactttttaaaag-ctaaaaaattattatttccaatgca 45257706  T
Q  117 aaactactatttttt 131  Q
    || ||||||||||||    
T  45257707 aagctactatttttt 45257721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 31463298 - 31463410
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||| |||| |||||| ||||||||| ||||||||||||||  ||||||||| | || ||||||| | |||||||| | |||||||  ||| ||| |||    
T  31463298 attggataaaggaacaaaaatagaaattttgtgttggaaagtggtaaaaagtggtcaagtcaacttgtaaaaagttt-acaaattgttgtttccaacgta 31463396  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  31463397 aaactactaatttt 31463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 32584542 - 32584599
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    |||| |||||||||||| |||| |  |||||||| |||||||||||||||||||||||    
T  32584542 aatataaatattgtgttagaaaatggtaaaaagtaatgaattcaactttttaaaagtt 32584599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 27628969 - 27628862
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||| ||||||||||| |||| ||| ||| ||||||||| | || ||||||| | || ||||||| | |||||||| | |||||||  |||||||||||    
T  27628969 attggataaaagaacaaaaataaaaaaattttgttggaaaatgattaaaagtggtcaagtcaacttgtaaaaagttt-ataaattgttgttttcaatgta 27628871  T
Q  117 aaactacta 125  Q
    || ||||||    
T  27628870 aagctacta 27628862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 52341687 - 52341631
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 91  Q
    |||||||||||| ||||||||| | || |||| ||||||||| ||||||||||||||    
T  52341687 aatagaaatattatgttggaaaatgatgaaaaatgatgaatttaactttttaaaagt 52341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 3180607 - 3180515
Alignment:
Q  37 tagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    |||||||||||||||| ||||   | ||||||| |||||||||||| | |||| ||| ||||||||| |||| ||||| ||||| |||| ||||    
T  3180607 tagaaatattgtgttgaaaaggggtgaaaagtggtgaattcaacttctgaaaaattt-aaaaattgttatttccaatgcaaaacaactactttt 3180515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 35511203 - 35511260
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    |||||||||||||| ||||||| |  | ||||||||||||||  ||||||||||||||    
T  35511203 aatagaaatattgtattggaaaatggtgaaaagtgatgaatttgactttttaaaagtt 35511260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 35675213 - 35675270
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    |||||||||||||| |||| || |  | |||||||||||||| |||||||||||||||    
T  35675213 aatagaaatattgtattgggaaatagtgaaaagtgatgaatttaactttttaaaagtt 35675270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 48604316 - 48604206
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||| |||| ||||||| |||||||||| | ||||| |||||  | |||| || ||||||||||  | ||||| ||| |||| ||||||||| |||||||    
T  48604316 attgattaagagaacaaaaatagaaataatatgttg-aaagtggtgaaaa-tgttgaattcaacactctaaaaattt-aaaagttgtaatttccaatgta 48604220  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  48604219 aaactactattttt 48604206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 51581461 - 51581510
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaa 66  Q
    ||||| |||| |||||| ||||||||| |||||||||||||| |||||||    
T  51581461 attggataaaggaacaaaaatagaaattttgtgttggaaagtgataaaaa 51581510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 20435795 - 20435867
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 89  Q
    |||||||||||  | || |||||||| ||||| ||||||| || | |||||||| ||||| ||||||||||||    
T  20435795 attggttaaaaagataaaaatagaaacattgtcttggaaaattgtgaaaagtgaagaatttaactttttaaaa 20435867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 40058196 - 40058304
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaac-tttttaaaagtttgaaaaattgtaattttcaatgt 115  Q
    ||||||||| |||||||||||| ||||||||| |||||||||  |||||||||||| || |||| ||||||||||||| |||||||||| |||||||| |    
T  40058196 attggttaagagaacaataataaaaatattgtcttggaaagtggtaaaaagtgatggatacaacttttttaaaagttt-aaaaattgtagttttcaatat 40058294  T
Q  116 aaaactacta 125  Q
    ||||||||||    
T  40058295 aaaactacta 40058304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 6237572 - 6237489
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaatt 101  Q
    ||||||||||||||||| |||| ||||||  |||||| |||| || |||| || |||||||||||||||||||| ||||||||||    
T  6237572 attggttaaaagaacaaaaataaaaatatcttgttgggaagtgatgaaaaatgctgaattcaactttttaaaag-ttgaaaaatt 6237489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 36054987 - 36055062
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 92  Q
    ||||| |||| |||||| |||| |||| |||||||||||||| |||||||||| | || ||||||| | |||||||    
T  36054987 attggataaaggaacaaaaataaaaattttgtgttggaaagtgataaaaagtggtcaaatcaacttgtaaaaagtt 36055062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 24286589 - 24286535
Alignment:
Q  28 gaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 82  Q
    |||||| ||||||||| |||||||||||||| |||||||||| | || |||||||    
T  24286589 gaacaaaaatagaaattttgtgttggaaagtgataaaaagtggtcaagtcaactt 24286535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 40452014 - 40451949
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 82  Q
    ||||| |||| |||||| ||| ||||| |||||||||||||| ||||||||| || || |||||||    
T  40452014 attggataaaggaacaaaaatggaaattttgtgttggaaagtgataaaaagtaatcaaatcaactt 40451949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 11799012 - 11799063
Alignment:
Q  68 tgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaac 120  Q
    ||||||||| || |||||||||||||| |||||||| |||||||||| |||||    
T  11799012 tgatgaattaaattttttaaaagtttg-aaaattgttattttcaatgcaaaac 11799063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 19389333 - 19389389
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 91  Q
    ||||||||||| || ||||||| || | ||||||||| |||| ||||||||||||||    
T  19389333 aatagaaatatagtattggaaaattgtgaaaagtgataaatttaactttttaaaagt 19389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 32522704 - 32522816
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||||||||| |||||| |||||||||||| |||||| |||| ||||| | || ||||||||||||||||||| ||| ||||||| | |||| ||||| |    
T  32522704 attggttaaaggaacaaaaatagaaatattttgttgggaagtgataaacattggtgaattcaactttttaaaa-tttaaaaaattattatttccaatgca 32522802  T
Q  117 aaactactattttt 130  Q
    ||||||||||||||    
T  32522803 aaactactattttt 32522816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 28782788 - 28782676
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    |||||||||||||| |  |||||||||| | ||||  ||| || ||||||||| |||||||||| ||||||||| |  |||| ||||||||||||||  |    
T  28782788 attggttaaaagaatataaatagaaataatttgttaaaaaattgtaaaaagtgttgaattcaacattttaaaag-taaaaaagttgtaattttcaataca 28782690  T
Q  117 aaactactattttt 130  Q
    ||||||||| ||||    
T  28782689 aaactactactttt 28782676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 10317322 - 10317221
Alignment:
Q  21 gttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaac 120  Q
    ||||| ||||||| |||||||| | ||||||| ||| | || ||||||| |||||||||||||  | ||||||| ||| |||| |||||||||| |||||    
T  10317322 gttaagagaacaaaaatagaaagaatgtgttgaaaaatgatgaaaagtgttgaattcaactttcaagaagtttg-aaagttgtcattttcaatgcaaaac 10317224  T
Q  121 tac 123  Q
    |||    
T  10317223 tac 10317221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 11594700 - 11594763
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa 98  Q
    |||||||||||||||||||||| |  | ||||||  |||||||||||||||| |||||| ||||    
T  11594700 aatagaaatattgtgttggaaaatggtgaaaagttgtgaattcaactttttataagtttaaaaa 11594763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 25017314 - 25017370
Alignment:
Q  35 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 91  Q
    ||||||||||| || ||||||| || | ||||||||| |||| ||||||||||||||    
T  25017314 aatagaaatatagtattggaaaattgtgaaaagtgataaatttaactttttaaaagt 25017370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 9013 - 9118
Alignment:
Q  17 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 116  Q
    ||||||||||| ||||  |||||||||| | ||||| ||| |  | ||||||| |||||||||||||||||||| |  ||||||||||| |||||||| |    
T  9013 attggttaaaataacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaag-tcaaaaaattgtaactttcaatgca 9111  T
Q  117 aaactac 123  Q
    |||||||    
T  9112 aaactac 9118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 62629 - 62694
Alignment:
Q  63 aaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||| ||||||||||||| ||||||||  ||||||| ||||||| |||| |||| ||||| ||||    
T  62629 aaaagtgttgaattcaactttctaaaagtt--aaaaattataatttttaatgcaaaattactactttt 62694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 69961 - 70026
Alignment:
Q  63 aaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 130  Q
    ||||||| ||||||||||||| ||||||||  ||||||| ||||||| |||| |||| ||||| ||||    
T  69961 aaaagtgttgaattcaactttctaaaagtt--aaaaattataatttttaatgcaaaattactactttt 70026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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