View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5111_low_18 (Length: 317)

Name: NF5111_low_18
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5111_low_18
NF5111_low_18
[»] chr6 (12 HSPs)
chr6 (18-307)||(23251771-23252060)
chr6 (19-307)||(23247360-23247648)
chr6 (19-307)||(23266303-23266591)
chr6 (19-307)||(23257748-23258036)
chr6 (42-307)||(23283444-23283709)
chr6 (42-288)||(23289757-23290003)
chr6 (74-307)||(23586945-23587178)
chr6 (59-279)||(23391243-23391463)
chr6 (176-307)||(23583164-23583294)
chr6 (60-307)||(23633965-23634212)
chr6 (174-280)||(23506899-23507005)
chr6 (227-307)||(23594164-23594244)
[»] chr5 (1 HSPs)
chr5 (224-279)||(3996385-3996440)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 23251771 - 23252060
Alignment:
Q  18 gaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23251771 gaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcactggtcattaaagtattgtctggtctaaaagcttcggcggcttttgt 23251870  T
Q  118 agctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23251871 agctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgct 23251970  T
Q  218 atcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23251971 atcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 23252060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 23247360 - 23247648
Alignment:
Q  19 aaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgta 118  Q
    ||||||||||||||||| ||| ||||| ||| |||| |  |||||||| |     ||||||||||||||||||||||||||||||||||| |||||||||    
T  23247360 aaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatattgttagtcattaaagtattgtctggtctaaaagcttcggccgcttttgta 23247459  T
Q  119 gctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgcta 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |    
T  23247460 gctgccttttgaatatcttttattgcggaagttgctggaataggaaggcgccacaccgagtctgagaaattgagacaggcatagcggcccctcaatgcca 23247559  T
Q  219 tcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    | || |||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23247560 ttgcagcaacatcgtgggctcgggcagccatctccggtgttggaaaagttcccagccaaatcctattctttgtgttcggctccctcatt 23247648  T

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Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 23266303 - 23266591
Alignment:
Q  19 aaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgta 118  Q
    ||||||||||| ||||| ||| ||||||||||||||||| || |||||||      |||||| |||||||||||||||||||||||||||||||||||||    
T  23266303 aaacatattcaactcctttgtggcgacaacagctacaacagtctcaatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgta 23266402  T
Q  119 gctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgcta 218  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |    
T  23266403 gctgccttttgaatatcttttattgaggaagttgctggaataggaagccgccacaccgaatctgcaaaattgagacaggcgtagcgacccctcaatgcca 23266502  T
Q  219 tcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| || |||||||||    
T  23266503 tcgcagcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaattctagtcttcgtgttgggttccctcatt 23266591  T

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Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 23257748 - 23258036
Alignment:
Q  19 aaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgta 118  Q
    ||||||||||| ||||| ||| || || |||| ||| ||||||||||| |||    |||||||||| ||||||||||||||||||||||| ||||  | |    
T  23257748 aaacatattcaactcctttgtggccacgacaggtactacggtgtcaatatcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagca 23257847  T
Q  119 gctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgcta 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23257848 gccgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgcca 23257947  T
Q  219 tcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    | ||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||  |||||||||| || |||||||||    
T  23257948 ttgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccccagccaaatcctggtctttgtgttgggttccctcatt 23258036  T

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Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 23283444 - 23283709
Alignment:
Q  42 cgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttat 141  Q
    |||| ||||| |||||||||||||||||    ||||||||||| ||||||||||| ||||| |||||||||| || ||||||| ||||||| ||||||      
T  23283444 cgacgacagccacaacggtgtcaatgtcgttagtcattaaagtcttgtctggtctgaaagcctcggcggcttctgcagctgccctttgaatgtcttttgc 23283543  T
Q  142 cgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgg 241  Q
      | |  |  || ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||| |||||     
T  23283544 ttcagcggaggcaggaataggaagcctccacaccgagtctgcaaagttgagacaggcatagcggccccttaatgccatggctgcaacgtcgtgtgctcgt 23283643  T
Q  242 gctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    || |||||||| || ||||||||||| ||||||||||||||| ||||| |||| || |||||||||    
T  23283644 gcagccatctcagccgttggaaaagtccctagccaaatcctagtctttttgttgggttccctcatt 23283709  T

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Target: chr6; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 288
Target Start/End: Original strand, 23289757 - 23290003
Alignment:
Q  42 cgacaacagctacaacggtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttat 141  Q
    |||||||||| ||||| ||||||||| ||   ||||||||||| ||||||||||| ||||| || ||||||| |  ||||||| ||||||| ||||||      
T  23289757 cgacaacagccacaaccgtgtcaatgccagtagtcattaaagtcttgtctggtctgaaagcctcagcggcttctccagctgccctttgaatgtcttttgc 23289856  T
Q  142 cgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgg 241  Q
      | |  |  || |||||||||||   |||| ||||||||||||| ||||||||||| ||||||||||||||||| || || ||||| ||||| || |||    
T  23289857 ttcagcggaggcaggaataggaagcttccacgccgagtctgcaaagttgagacaggcgtagcggcccctcaatgcaattgctgcaacgtcgtgtgcacgg 23289956  T
Q  242 gctgccatctcggctgttggaaaagttcctagccaaatcctattctt 288  Q
    || |||||||||||||||| |||||| ||||||||||||||| ||||    
T  23289957 gcagccatctcggctgttgcaaaagtccctagccaaatcctagtctt 23290003  T

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Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 307
Target Start/End: Original strand, 23586945 - 23587178
Alignment:
Q  74 gtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccaca 173  Q
    |||| |||||| ||||||||||| ||||| |||||||| | |||||| |||||||| ||||| |||      | |||||| ||  | || || ||||||     
T  23586945 gtcaataaagtcttgtctggtctgaaagcctcggcggcctctgtagcagccttttgtatatcctttgcttgagtagttgcaggtttggggagccgccacg 23587044  T
Q  174 ccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctag 273  Q
    | ||||||||||| |||||||| || ||||||||||||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  23587045 ctgagtctgcaaagttgagacaagcgtagcggcccctcaatgccattgcagcaacatcgtgggcacgggctgccatctcggcagttggaaaagtccctag 23587144  T
Q  274 ccaaatcctattctttgtgttcggctccctcatt 307  Q
    ||||||| || ||||  |||| ||||||||||||    
T  23587145 ccaaatcttagtcttcttgttaggctccctcatt 23587178  T

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Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 279
Target Start/End: Original strand, 23391243 - 23391463
Alignment:
Q  59 gtgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaa 158  Q
    ||||||||||||   || ||| |||| ||||||||||| ||||| || ||||| | || ||| |||||||| |||||||||  |   |  || || || |    
T  23391243 gtgtcaatgtcattagtaattgaagtcttgtctggtctgaaagcctcagcggcctgtgcagccgccttttgtatatcttttgcctgagtggtggcaggta 23391342  T
Q  159 taggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgt 258  Q
    |||| || |||||| | ||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||    
T  23391343 tagggagccgccacgcggagtctgcaaagttgagacaggcgtagcggcccctcaatgccattgcggcaacatcatgtgctcgggctgccatctccgcagt 23391442  T
Q  259 tggaaaagttcctagccaaat 279  Q
    ||||||||| |||||||||||    
T  23391443 tggaaaagtgcctagccaaat 23391463  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 23583164 - 23583294
Alignment:
Q  176 gagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagcc 275  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| || || |||||||||||||| |||| ||||||||| || ||||||||||| |||||||    
T  23583164 gagtctgcaaagttgagacaggcgtagcggccc-tcaatgccattgcagcaacatcgtgggcacgggttgccatctccgcagttggaaaagtccctagcc 23583262  T
Q  276 aaatcctattctttgtgttcggctccctcatt 307  Q
    ||||| || ||||  |||| |||| |||||||    
T  23583263 aaatcttagtcttcttgttaggcttcctcatt 23583294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 307
Target Start/End: Original strand, 23633965 - 23634212
Alignment:
Q  60 tgtcaatgtcaccggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaat 159  Q
    ||||| ||||| | ||| ||||||| ||||||||||| ||||| ||||| |||| || ||| | |||||| |||||| || || | | ||| || |||||    
T  23633965 tgtcattgtcatcagtcgttaaagtcttgtctggtctgaaagcctcggcagcttctgcagccgtcttttgtatatctcttgtctctgtagtggcaggaat 23634064  T
Q  160 aggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgtt 259  Q
    |||||| ||| |  | ||||| |||||||| |||||||| | ||| || || ||||| |  || || ||||| || ||||| |||||||||||||| |||    
T  23634065 aggaagccgcgaggcagagtcagcaaaattaagacaggcgttgcgacctcttaatgccaatgccgcgacatcatgtgctcgtgctgccatctcggccgtt 23634164  T
Q  260 ggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    |||||||| |||||||||||| || ||||  |||| ||||||||||||    
T  23634165 ggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatt 23634212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 23506899 - 23507005
Alignment:
Q  174 ccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctag 273  Q
    ||||||||||||| ||||||||||| | ||  ||  |||| || |  || |||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  23506899 ccgagtctgcaaagttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctag 23506998  T
Q  274 ccaaatc 280  Q
    |||||||    
T  23506999 ccaaatc 23507005  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 23594164 - 23594244
Alignment:
Q  227 acatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatt 307  Q
    ||||| |||||||| ||| ||||||| ||  ||||||||||||||||||| ||| || || |  |||| ||||||||||||    
T  23594164 acatcatgggctcgtgcttccatctcagccattggaaaagttcctagccatatcttagtcatcttgttaggctccctcatt 23594244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 3996385 - 3996440
Alignment:
Q  224 gcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaat 279  Q
    ||||| || |||||||| ||||||||||||| ||||||| |||| |||||||||||    
T  3996385 gcaacgtcatgggctcgagctgccatctcgggtgttggataagtgcctagccaaat 3996440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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