View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_22 (Length: 251)
Name: NF5111_low_22
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_22 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 72955 - 73197
Alignment:
| Q |
10 |
attatactgaattcatgattttgatgatcaaaggcttcacgtttgttctcttgacctcggattgatacctcgtgctaccaaggcttttaggggtggtaga |
109 |
Q |
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| T |
72955 |
attatactgaattcatgattttgatgatcaaaggcttcacgtttgttctgttgaccttggattgatacctcgtgctaccaaggcttttaggggtggtagc |
73054 |
T |
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| Q |
110 |
t-cagcaaagttgtgcaggatttaagtttgtttgatgtcattcttgagggaattttcagcaaagttgatacctcgttaacatttcccttaattgaatcat |
208 |
Q |
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| T |
73055 |
ttcagcaaagttgtgcaggatttaagtttgtttgatgtcattcttgagggaattttcagcaaagttgatacctcgttaacatttcccttaattgaatcat |
73154 |
T |
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| Q |
209 |
gagtcataatagagaagccggtcaacaaaggtgacagtagtag |
251 |
Q |
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| T |
73155 |
gagtcataatagagaagccggtcaacaaaggtgacagtagtag |
73197 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 49067770 - 49067680
Alignment:
| Q |
77 |
cctcgtgctaccaaggcttttaggggtggtagat-cagcaaagttgtgcaggatttaagtttgtttgatgtcattcttgagggaattttca |
166 |
Q |
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| T |
49067770 |
cctcgtgctaccaaatctttcagaagtggtagcttcagcaaagttgtgcaggatttgaccgggttttatgtcattcttgagggatttttca |
49067680 |
T |
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