View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_27 (Length: 223)
Name: NF5111_low_27
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 27764882 - 27765040
Alignment:
| Q |
43 |
ataacctaatgccatggtggtgtgcttgaccgtgtcaacatcacctccaaacctcaatgagggtagaaggccaagtccttgagtccaaggcccaataagg |
142 |
Q |
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| T |
27764882 |
ataacctcatgtcatggtggtgcgcttgaccgtgtcaacatcacctccaaacctcaatgagggtagaaggccaagtccttgagtccaaggccca------ |
27764975 |
T |
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| Q |
143 |
cacataaggcaaaacacataccacctatgacattgaagttgtgcatcgagtaataaagccttgagagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27764976 |
---ataaggcaaaacacataccacctatgacattgaagttgtgtatcgagtaataaagccttgagagt |
27765040 |
T |
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