View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_28 (Length: 217)
Name: NF5111_low_28
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 6073469 - 6073286
Alignment:
| Q |
10 |
gtcgaagaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagacc |
109 |
Q |
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| T |
6073469 |
gtcgtagaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccgtcttatttggtcgtgaagtgtgtcaacggtatttataaatgtgttagacc |
6073370 |
T |
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| Q |
110 |
gtagttcaaataaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat |
193 |
Q |
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| T |
6073369 |
gtagttcaaataaaaacctaatcccaagtgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat |
6073286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 6080517 - 6080354
Alignment:
| Q |
15 |
agaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagt |
114 |
Q |
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| T |
6080517 |
agaagatgttttagagattctgattgtccaaaaaatatgtgtccatcctatttggtcgtgaagtgtctcagaagtaattgtaagtgtgttagaccagggt |
6080418 |
T |
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| Q |
115 |
tcaaataaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaa |
178 |
Q |
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| T |
6080417 |
tgcaagtaagacttaatcccaattgattttgtatttagtgaaagagtcaagagagtgcacaaaa |
6080354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 6068821 - 6068986
Alignment:
| Q |
15 |
agaaaatgtttcagagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagt |
114 |
Q |
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| T |
6068821 |
agaaaatgttttagagattctgattgtccaaaatttatgtgcccatcttatttggccgtgaagtgtatcggaagactttgtaggtgtggtagaccggagt |
6068920 |
T |
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| Q |
115 |
tcaaataaaaacctaatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagt |
180 |
Q |
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| T |
6068921 |
tgcaagtagaacttaatcccaaatgattttgtatttagtgaaagaaccaagagagtaaacaaaagt |
6068986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 6113281 - 6113348
Alignment:
| Q |
128 |
taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattac |
196 |
Q |
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| T |
6113281 |
taatcccaagtgattttgtatttagtgaaagaaccaagagaatacacaaaagt-cttttagaatattac |
6113348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 6120173 - 6120242
Alignment:
| Q |
128 |
taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat |
198 |
Q |
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| T |
6120173 |
taatcccaagtgattttgtatttactgaaagaaccaggagagtacacaaaagt-cttttagaatattacat |
6120242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 6091475 - 6091406
Alignment:
| Q |
128 |
taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat |
198 |
Q |
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| T |
6091475 |
taatccctagtgattttgtatttagtgaaagaaccaagacaggacacaaaagt-cttttagaatattacat |
6091406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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