View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_29 (Length: 216)
Name: NF5111_low_29
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 7132988 - 7133189
Alignment:
| Q |
1 |
cactgtgaagcctcagtctaaggctattaacatatttgtttttgccggccacttatattgatcactaacaaactctgaatacggcagtagaatggacctg |
100 |
Q |
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| T |
7132988 |
cactgtggagcctcagtctaaggctattaacatatttgttttttccggccacttatattgatcactaacaaactctgaatacggcagtagaatggacctg |
7133087 |
T |
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| Q |
101 |
atgtcgagcttaacttcctccagaagccaattcaaacgatcctctagctaacaaccatgaatataaatagccgcattcgcgtcctgccacttaatcagaa |
200 |
Q |
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| T |
7133088 |
atgccgagcttaacttcctccagaagccaattcaaatgatcctctagctaacaaccatgaatataaatagccgcattcgcgtcctgccactcaatcagaa |
7133187 |
T |
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| Q |
201 |
ta |
202 |
Q |
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|| |
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| T |
7133188 |
ta |
7133189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 7124594 - 7124686
Alignment:
| Q |
71 |
aactctgaatacggcagtagaatggacctgatgtcgagcttaacttcctccagaagccaattcaaacgatcctctagctaacaaccatgaatat |
164 |
Q |
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| T |
7124594 |
aactctgtatgcggcagtacaatggacctgatatggagcttcacttcctccgga-gccaattcaaacgatcctttagccaacaaccatcaatat |
7124686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 7127827 - 7127885
Alignment:
| Q |
106 |
gagcttaacttcctccagaagccaattcaaacgatcctctagctaacaaccatgaatat |
164 |
Q |
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| T |
7127827 |
gagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatat |
7127885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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