View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_4 (Length: 797)
Name: NF5111_low_4
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 169 - 780
Target Start/End: Complemental strand, 40642152 - 40641541
Alignment:
| Q |
169 |
catgagttgtcagttgtggttggtaaacatacgagaaggcagacaaacacaaagaacacatatatctactctttgtacagaatcaaacaaaccacagagc |
268 |
Q |
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| T |
40642152 |
catgagttgtcagttgtggttggtaaacatacgagaaggcagacaaacacaaagaacacatatatctactctttgtacagaatcaaacaaaccacagagt |
40642053 |
T |
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| Q |
269 |
aaccatttcagtataaaccagcattcaaatttttcagcatttacttcaaattgtaagtttcaaagagattttcacatcaaaccagagggaacaccaagaa |
368 |
Q |
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| T |
40642052 |
aaccatttcagtataaaccagcattcaaatttttcggcatttactccaaattgtaagtttgaaagagattttcacatcaaaccagagggaacaccaagaa |
40641953 |
T |
|
| Q |
369 |
aaatccattttcactaaaattctaggttgcctttggaaaatagtataaagccttgtctaaattttaattttagtgcttaaggaatacacannnnnnncaa |
468 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
40641952 |
aaatccatcttcactaaaattctaggttgcctttggaaaatagtataaagccttgtctaaattttaattttagtgcttaaggaatatacatttttttcaa |
40641853 |
T |
|
| Q |
469 |
aggtgacctagataattaaaatttctgtattcnnnnnnntaatcccttatagtaaactttcagaaaagataaaatcatcttctaataaaattaaggatgt |
568 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40641852 |
aggtgacctagataattatgatttctgtattcaaaaaaataatcccttatagtaaactttcagaaaagataaaatcatcttctaataaaattaaggatgt |
40641753 |
T |
|
| Q |
569 |
gaacaaatagttatctttttggtaacaaattgctatctgaatcccttatatgcatttcataaaaggttttaactaatcagaatcaagattaagaagaggt |
668 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
40641752 |
gaacaaatagttatctttttggtaacaaattgctatctgaatcccttatgtgcatttcataaaaggttttaactaatcagagtcaagattaagaaaaggt |
40641653 |
T |
|
| Q |
669 |
tcccctcnnnnnnnggttaagctatgtttggattgatgaaatgtaatagagtggagcggaatggaactcaatgaaatggaacggaatggaatagagattc |
768 |
Q |
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| T |
40641652 |
tcccctcaaaaaaaggttaagctctgtttggattgatgaaacgtaatagattggagcggaatggaactcaatgaaatggaacggaatggaatagagattc |
40641553 |
T |
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| Q |
769 |
tatcacgtcata |
780 |
Q |
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| T |
40641552 |
tgtcacgtcata |
40641541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 40642290 - 40642198
Alignment:
| Q |
31 |
gtatctatcagagtagttaagtccgataacataagacgattcaaatcagtatactcaagaacgtgttacatcgcagatattggattaatgctt |
123 |
Q |
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| T |
40642290 |
gtatctatcagagtagttaagtccgataacatattacgattaaaatcagtatactcaagaacgtgttacatcacagatattggattaatgctt |
40642198 |
T |
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