View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5111_low_5 (Length: 689)
Name: NF5111_low_5
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_5 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 552; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 20 - 680
Target Start/End: Original strand, 12899153 - 12899813
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899153 |
catctaccaccgtgccctatcaagggtaggaaacatgtaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
12899252 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12899253 |
tttcatttatcataactatctacatgatgagtaaaataaatcaaaagagatcttttgattcaccagcaattgatcaactagctaaggtttcgtaccaaga |
12899352 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899353 |
attacacgtaggaaccgatggattctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatatagtttcagaagataatgtt |
12899452 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899453 |
gttgcagtaaaggtcttgaatctgcaaaaaaagggtgctcacaagagtttcattttagaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
12899552 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12899553 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacaatggttaca |
12899652 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899653 |
tcccgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
12899752 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12899753 |
gaatgtgagcaattagtctttcattgtgatataaagccaagcaatgtccttcttgatgatg |
12899813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 680
Target Start/End: Original strand, 12906773 - 12907433
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12906773 |
catctaccaccatgctctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtcatagttagtgtggtttcttttattctcatac |
12906872 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12906873 |
tttcatttatcataactatctacatgatgaggaaaagaaatcaaaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaaga |
12906972 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
12906973 |
attacacgtaggaaccgatgaattctcggatagaaacatgatcggatcaggaagttttggttccgtatacaaaggaaatattgtttcagaagataatgtt |
12907072 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
|||||||||||||||||||| || | || |||||||| ||||| |||| ||||||||| ||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
12907073 |
gttgcagtaaaggtcttgaacctccaaacaaagggcgctcacaaaagtttcattgttgaatgtaacgcactcaaaaatattagacacagaaatttggtta |
12907172 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907173 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttaca |
12907272 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907273 |
tcctgaaactttgaatgcaaatcctccaacaacattgaaccttggtcttagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
12907372 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12907373 |
gaatgtgagcagttaatcctccattgtgatctaaaaccaagcaatgtccttcttgatgatg |
12907433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 680
Target Start/End: Original strand, 12931862 - 12932522
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12931862 |
catctaccaccatgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgctagttagtgtggtttcttttattctcatac |
12931961 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12931962 |
tttcatttatcataactatctacatgatgaggaaaagaaatcagaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaaga |
12932061 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||| |
|
|
| T |
12932062 |
attacatgttggaaccgatggattctcaaatagaaacatgatcggatcaggaagttttggttccgtttacaaaggaaatatagtgtcagaagataatgtt |
12932161 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12932162 |
gttgcagtaaaggtcttgaatctgcaaaaaaagggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggtta |
12932261 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932262 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaaatggaagcttagaacagtggttaca |
12932361 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
12932362 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcga |
12932461 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12932462 |
gaatgtgagcagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatg |
12932522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 20 - 680
Target Start/End: Original strand, 12948227 - 12948887
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12948227 |
catctaccaccatgccctatcaatggtaggaaacatgcaaagcaacaaaagttcaggttgatagcagggatagttagtgtggtttcttttattctcatac |
12948326 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
12948327 |
tttcatttatcataactatctacatgatgaggaaaagaaatcaaaagagatcttttgattcacctacaattgatcaactagctaaggtttcataccaaga |
12948426 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12948427 |
attacatgttggaacccatggattctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgtt |
12948526 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||||||||| |||||||| || | || |||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
12948527 |
gttgcagtaaaagtcttgaacctccagaaaaagggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattagacaccgaaatttggtta |
12948626 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12948627 |
aggttttaacatgttgttctagcacaaataacaaaggccaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttaca |
12948726 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12948727 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttcgtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcga |
12948826 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12948827 |
taatgtgagcaattagtccttcattgtgatctaaaaccaagcaatgtccttcttgatgatg |
12948887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 20 - 677
Target Start/End: Original strand, 12957661 - 12958318
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12957661 |
catctaccaccatgccctatcaagggtaggaaacatgcaaagcaacacaagttcaggttgatagcagtgatagttagtgcggtttcttttattctcatac |
12957760 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
12957761 |
tttcatttatcataactatctacatgatgaggaaaagaaatcaaaagagatcttttgattcacctacaattgatcaactagctaaggtttcataccaaga |
12957860 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12957861 |
attacatgttggaaccaatggattctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgtt |
12957960 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
|||||| |||| |||||||| || | || |||||||||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
12957961 |
gttgcaataaaagtcttgaacctccagaaaaagggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggtta |
12958060 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12958061 |
gggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatggaaaatggaagcttagaacagtggttaca |
12958160 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|||| | | ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12958161 |
tcctcaaattttgaatgcgagtcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
12958260 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatg |
677 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12958261 |
gaatgtgagcagttaatccttcactgtgatctaaagccaagcaatgtccttcttgatg |
12958318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 20 - 680
Target Start/End: Complemental strand, 17924029 - 17923369
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17924029 |
catctaccaccatgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
17923930 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17923929 |
tttcatttatcatcactatctacatgatgaggaagagaaatcaaaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaaga |
17923830 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17923829 |
attacacgtaggaaccgatggattctcagatagaaacatgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgtt |
17923730 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
|||||||| || |||||||| || | || |||||||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
17923729 |
gttgcagttaaagtcttgaacctccataaaaagggagctcacaagagtttcgttgttgaatgtaacgcactcaaaaatattagacaccgaaatttggtta |
17923630 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923629 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttaca |
17923530 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17923529 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcga |
17923430 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17923429 |
gaatgtgagcagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatg |
17923369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 680
Target Start/End: Original strand, 10564610 - 10565270
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10564610 |
catctaccaccatgccctatcaagggtaggaaacatgcaaaacagaaaaagatcaggttgatggcagtgataattagtgtggtttcttttcttctcatac |
10564709 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||| |||| |||||| |||||| ||| || ||||||||||| |||||||||| |||||||| |
|
|
| T |
10564710 |
tttcatttatcataactatctactggatgaggaaaagaaatccaaagcgatcttgtgattcaccaacagttgatcaactatctaaggtttcgtaccaaga |
10564809 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||| || |||| ||||||| | || ||||||||||||||| |
|
|
| T |
10564810 |
attacatcaaggaaccgatgggttctcaactagaaacttgataggatcaggaagttttggtcttgtgtacaaaggaaatcttgtgtcagaagataatgtt |
10564909 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||| ||||||||| |||| || | || |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
10564910 |
gttgccgtaaaggtcctgaacctccaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactcaaaaatattcgacaccgaaatttagtta |
10565009 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||| || |
|
|
| T |
10565010 |
aggttttaacctgttgttcaagtacagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgca |
10565109 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|||||||| ||| |||||| | || |||||||||||| || ||| | |||||||| |||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
10565110 |
tcctgagattttaaatgcagaacccccaacaacattggactttgctcatagattatacattattatcgatgttgcttctgcattacattatcttcataga |
10565209 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10565210 |
gaatgtgaagaattggtcattcattgtgatctaaagccaagcaatatccttcttgacgatg |
10565270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 680
Target Start/End: Complemental strand, 10763760 - 10763099
Alignment:
| Q |
19 |
acatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcata |
118 |
Q |
| |
|
|||||||||| | |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
10763760 |
acatctaccatcatgccctgtcaagggtattaaacatgcaaaacgacacaagttcaggttgatagcagtgatagttagcgtggtttcttttcttctcata |
10763661 |
T |
|
| Q |
119 |
ctttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaag |
218 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||||||||||| |||| ||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
10763660 |
ctttcatttatcataactatctactgcataaggaaaagaaatccaaagcgatcttttgattcaccaacaattgagcaactagataaggtttcataccaag |
10763561 |
T |
|
| Q |
219 |
agttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgt |
318 |
Q |
| |
|
|||||| | |||||| ||||| |||||||||| |||| |||||||||||||||||| |||| || |||||||||||| | || |||||||| ||| | |
|
|
| T |
10763560 |
agttactccaaggaacagatgggttctcggataaaaacctgatcggatcaggaagttctggtgatgtgtacagaggaaatcttgtgtcagaagacaatat |
10763461 |
T |
|
| Q |
319 |
tgttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtt |
418 |
Q |
| |
|
|||||| |||| ||||| || || | ||| |||||||||||||| |||| ||||||||||||||| ||||| |||| |||||| ||||| ||| |
|
|
| T |
10763460 |
tgttgctataaaagtcttcaacctccaaaacaatggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattcaacaccggaatttagtt |
10763361 |
T |
|
| Q |
419 |
aaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttac |
518 |
Q |
| |
|
||| ||||||||||||||||||| || |||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||| | | |
|
|
| T |
10763360 |
aagattttaacatgttgttctagtactgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaacgatggctgc |
10763261 |
T |
|
| Q |
519 |
atcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcg |
618 |
Q |
| |
|
| ||| || ||| |||||| | |||||||||||||| | |||| | | ||| | || ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10763260 |
accctaggaatttaaatgcagagactccaacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcg |
10763161 |
T |
|
| Q |
619 |
agaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10763160 |
agaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
10763099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 680
Target Start/End: Complemental strand, 10741325 - 10740665
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||| | ||||||||||||| ||| |||||||||||| |||| || |||| ||||||||||||||||||||| ||| |||||||| | ||||||| |
|
|
| T |
10741325 |
catctaccatcatgccctatcaaggatagtaaacatgcaaaaaaacataatttcaagttgatagcagtgatagttagcgtgatttcttttctgctcatac |
10741226 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| | || || ||| | ||||||||| ||||| ||||| ||| |||||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
10741225 |
tttcatttgttatttctatctgctggatgaggaagagaaaccaaaacccatcctttgattcaccaactattgatcaactagctaaggtttcatatcaaga |
10741126 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
|||||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |||| ||||||| | || ||||||| |||||| |
|
|
| T |
10741125 |
cttacaccgaggaaccgatgggttctcagaaagaaacttgatcggatcaggaagttttggttctgtgtacaaaggaaatcttgtgacagaagacaatgtt |
10741026 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
10741025 |
gttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactcaaaaatattagacaccgaaatttagtta |
10740926 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|| |||| |||||||||||||| ||| |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
10740925 |
agattttgacatgttgttctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgca |
10740826 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|| ||||| ||| |||||| ||| ||||| ||||||| |||||||| |||||||||||||||| | |||||| || ||||||||||||||||||| | | |
|
|
| T |
10740825 |
tcttgagattttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgaacgatgtcgccactgcattacattatcttcaccaa |
10740726 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10740725 |
gaatgtgaacaattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
10740665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 73 - 680
Target Start/End: Original strand, 10604388 - 10604995
Alignment:
| Q |
73 |
caggttgatagcagtgatagttagtgtggtttcttttattctcatactttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatct |
172 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| || ||||||||||| || ||||| || |||| | ||||||||||||| ||||| |||| |
|
|
| T |
10604388 |
caggttgatagcagtgatagttggtgtggtgtcttttcttttcatactttcagttatcatagctatctattgggtgaggaaaagaaaccaaaacccatct |
10604487 |
T |
|
| Q |
173 |
tttgattccccagcaattgatcaactagctaaggtttcataccaagagttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaa |
272 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||||||| || |||||| |||||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
10604488 |
tttgattcaccagcaattcatcaactagataaggtttcataccatgacttacaccaaggaaccgatgggttctcggatagaaacttgattggattaggaa |
10604587 |
T |
|
| Q |
273 |
gttttggttcggtatacagaggaaatatagtttcagaagataatgttgttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttat |
372 |
Q |
| |
|
|||||||||| || |||||||||||| | || |||||||||||||| ||||| ||||||||| |||| || | || || ||||||| ||| || |
|
|
| T |
10604588 |
gttttggttctgtgtacagaggaaatcttgtgtcagaagataatgtagttgctgtaaaggtcctgaacctccaaaagaagggagcacacaagaatttcat |
10604687 |
T |
|
| Q |
373 |
tgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagct |
472 |
Q |
| |
|
|| |||||||||||||||||||| || ||||||| ||||| ||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
10604688 |
tgttgaatgtaatgcactcaaaactataagacaccggaatttagttcaagttttaacatgttgttctagtacagattacaaaggtcaagaatttaaagct |
10604787 |
T |
|
| Q |
473 |
ctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagat |
572 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||| ||| |||||| | ||||||||||| ||| |||||||| | |||| |
|
|
| T |
10604788 |
ctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcctgagattttaaatgcagagcctccaacaacgttggaccttggtaaaagat |
10604887 |
T |
|
| Q |
573 |
taaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttct |
672 |
Q |
| |
|
| |||||||| | ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
10604888 |
ttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatgtgagcaattagtcattcattgtgatctaaagccaagcaatgtcctact |
10604987 |
T |
|
| Q |
673 |
tgatgatg |
680 |
Q |
| |
|
|||||||| |
|
|
| T |
10604988 |
tgatgatg |
10604995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 673
Target Start/End: Complemental strand, 11049283 - 11048630
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||||||| | | || || ||||||||| || |||||||||||||||||||||||||| || |||||| |
|
|
| T |
11049283 |
catctaccatcatgccctatcaaaggtagaaaacatgcaacaaaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatac |
11049184 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| | |||| | || | ||||| |||||||| ||||| |||||||||||| ||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11049183 |
tttcatttattataattatcacctggatgaaaaaaagaaaccaaaaaccatcttttgattcaccaacaattgatcaactagataaagtttcataccaaga |
11049084 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||| ||||||||| |||| ||||| || |||||||||||| | || || |||| ||||||| |
|
|
| T |
11049083 |
tttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgtt |
11048984 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||| || || ||||| || || | ||| ||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||| || |||| |
|
|
| T |
11048983 |
gttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaaaacattagacaccgaaacttagtta |
11048884 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
11048883 |
aggttttaacctgttgttctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatggaagcttagaacaatggttaca |
11048784 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|||||||| ||| ||| || | | ||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
11048783 |
tcctgagattttaaattcagagcatccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaa |
11048684 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttctt |
673 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11048683 |
gaatgtgagcaattgattattcattgtgatctaaagccaagtaatgttcttctt |
11048630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 680
Target Start/End: Original strand, 10611293 - 10611953
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| ||||||| || | |||||| ||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
10611293 |
catctagcaccatgccctatcaagggtaggaaacacccaaaacaccatatattcaggctgatagcagtgatagttagcatggtttcttttcttctcatat |
10611392 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
||| |||| | |||||| ||||| | | ||||||| ||||||||| |||||||| ||||| ||| ||| ||||||| |||||||||||||| || ||| |
|
|
| T |
10611393 |
ttttatttattataactatctactgggtaaggaaaataaatcaaaaaagatctttcgattcaccaccaaatgatcaagaagctaaggtttcattccgaga |
10611492 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||||||||| | || |||||||| |||||| |
|
|
| T |
10611493 |
cttataccaaggaaccgatgggttctcagatagaaacttgatcggatcaggaagttttggtgatgtgtacagaggaaatcttgtgtcagaagacaatgtt |
10611592 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||| |||||||||| || || | ||| |||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||| |||| |
|
|
| T |
10611593 |
gttgctataaaggtcttcaacctccaaaacaatggagctcacaagagtttcattgttgaatgtaatgcactaaaatttattagacaccgaaatttagtta |
10611692 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
10611693 |
agattttaacatgttgttctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgca |
10611792 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
||| || ||| |||| | | | | || |||||||| |||| || |||||||||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
10611793 |
tcccaaggttttaaatgaagagcatacagcaacattggacctcagtcatagattaaacatcattatggatgttggttctgcattacattatcttcataat |
10611892 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
10611893 |
gaatgtgagcaattggtccttcattgtgatataaagccaagcaatgtcctacttgatgatg |
10611953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 680
Target Start/End: Complemental strand, 10717566 - 10716906
Alignment:
| Q |
20 |
catctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatac |
119 |
Q |
| |
|
||||||||| | ||||||||||||||||| || ||||||| |||| || |||| |||||||||||||||| |||||||| ||| |||| | ||||||| |
|
|
| T |
10717566 |
catctaccatcatgccctatcaagggtagtaagagtgcaaaaaaacataatttcaagttgatagcagtgatatttagtgtgattttttttttgctcatac |
10717467 |
T |
|
| Q |
120 |
tttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaaga |
219 |
Q |
| |
|
|||||||| | || || ||| | ||||||||| ||||| ||||| ||| |||||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
10717466 |
tttcatttgttatttctatctgctggatgaggaagagaaaccaaaaaccatcctttgattcaccaactattgatcaactagctaaggtttcatatcaaga |
10717367 |
T |
|
| Q |
220 |
gttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgtt |
319 |
Q |
| |
|
|||||| |||||||||||| ||||| || ||||||||||| |||||||||||||||||||| || |||| ||||||| | || |||||||| |||||| |
|
|
| T |
10717366 |
cttacaccgaggaaccgatgggttctcagaaagaaacttgattggatcaggaagttttggttctgtgtacaaaggaaatcttgtgtcagaagacaatgtt |
10717267 |
T |
|
| Q |
320 |
gttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggtta |
419 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||||| |||| ||||||||||||||| ||||| || ||||||||||| | || | |
|
|
| T |
10717266 |
gttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatatcagacaccgaaatctagtga |
10717167 |
T |
|
| Q |
420 |
aggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttaca |
519 |
Q |
| |
|
|| | ||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
10717166 |
agatattaacatgttgttctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgca |
10717067 |
T |
|
| Q |
520 |
tcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcga |
619 |
Q |
| |
|
|| ||||| ||| |||||| ||| ||||| ||||||| |||||||| |||||||||||||||| |||||||| || ||||||||||||||||||| | | |
|
|
| T |
10717066 |
tcttgagattttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgatcgatgtcgccactgcattacattatcttcaccaa |
10716967 |
T |
|
| Q |
620 |
gaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||||| | |||| || ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10716966 |
gaatgtgaacaattaatcattcattgtgatcttaagccaagcaatgtccttcttgatgatg |
10716906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 662
Target Start/End: Original strand, 10580573 - 10581228
Alignment:
| Q |
19 |
acatctaccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcata |
118 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||| | || || |||| ||||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
10580573 |
acatctaccaccatgccctttcaagggtaggaaacatataaaaaaccataatttcaagttgatagctatgatagtcagtgtggtttcttttcttctcata |
10580672 |
T |
|
| Q |
119 |
ctttcatttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaag |
218 |
Q |
| |
|
||||||||| | ||| || |||| ||| || ||||| || |||| ||| || ||||| || ||| |||||||||| ||||||||||||| ||| |
|
|
| T |
10580673 |
ctttcatttattatagctatctattggataagtaaaaggaacaaaaaatcatcattagattcttcaataatagatcaactagataaggtttcatacaaag |
10580772 |
T |
|
| Q |
219 |
agttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgt |
318 |
Q |
| |
|
| |||||| |||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| || |||| ||||||| | || |||||||||||||| |
|
|
| T |
10580773 |
acttacacaaaggaactgatgggttctcggatagaaacatgatcgggtcaggaagttttggttccgtgtacaaaggaaatcttgtgtcagaagataatgt |
10580872 |
T |
|
| Q |
319 |
tgttgca-------------gtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgaca |
405 |
Q |
| |
|
||||||| |||||||||||||| || | || ||||||||||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
10580873 |
tgttgcataatgttgttgcagtaaaggtcttgaacctccaaaagaaaggagctcacaagagttttattgttgaatgtaatgcactcaaaaatattagaca |
10580972 |
T |
|
| Q |
406 |
ccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagctta |
505 |
Q |
| |
|
|| |||||| || |||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||| | ||||||||||||||||||||| |
|
|
| T |
10580973 |
ccaaaatttagtcaaggttctaacatgttgttctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaaatggaagctta |
10581072 |
T |
|
| Q |
506 |
gaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattac |
605 |
Q |
| |
|
||||| ||||| |||||| ||| ||| | |||| | |||| ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
10581073 |
gaacaatggttgcatcctcaga-tttaagtgcagaacctctaacaacattgaaccttggtcatagattaaacatcattatggatgttgcttctgcattac |
10581171 |
T |
|
| Q |
606 |
attatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagca |
662 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
10581172 |
attatcttcatcgagaatgtgagcaattggtccttcgttgtgatctaaagccaagca |
10581228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 32 - 672
Target Start/End: Complemental strand, 10217365 - 10216723
Alignment:
| Q |
32 |
tgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtga--tagttagtgtggtttcttttattctcatactttcattttt |
129 |
Q |
| |
|
||||||||||| |||||||||||||||| | | | || | |||||||||| |||||| |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
10217365 |
tgccctatcaacggtaggaaacatgcaacaaactataattccaggttgatatcagtgagatagttagtgtggtttcttttcttatcatactttcatttat |
10217266 |
T |
|
| Q |
130 |
cataactgtctacatg-atgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaagagttacacgt |
228 |
Q |
| |
|
|||| | || || || |||| |||||||| ||||| |||||||||||| ||| |||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
10217265 |
tataattatc-acttggatgaaaaaaagaaaccaaaatccatcttttgattcaccaacaatcgatcaactagctaaagtttcataccaagacttacatca |
10217167 |
T |
|
| Q |
229 |
aggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgttgttgcagta |
328 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||| ||||||||||||||||||| || || || || ||| | || ||||||| |||||||||||| || |
|
|
| T |
10217166 |
aggaactgatgggttctcggataaaaacttgattggatcaggaagttttggttgtgtgtatagcgggaatcttgtgtcagaagttaatgttgttgctgtg |
10217067 |
T |
|
| Q |
329 |
aaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaa |
428 |
Q |
| |
|
|||||| | || || | ||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
10217066 |
aaggtcctaaacctccaaaagaatggagctagcaagagttttattgttgaatgtaatgcactcaaaaacattagacaccgaaactcagttaaggttttaa |
10216967 |
T |
|
| Q |
429 |
catgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagac |
528 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
10216966 |
catgttgttctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctgagat |
10216867 |
T |
|
| Q |
529 |
tttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgag |
628 |
Q |
| |
|
||| ||| || | | ||||| ||||||| |||||||| |||| ||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
10216866 |
tttaaattcagagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttcggcattacattatctgcatcaagaatgtgag |
10216767 |
T |
|
| Q |
629 |
ctattagtccttcattgtgatctaaagccaagcaatgtccttct |
672 |
Q |
| |
|
| ||| | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10216766 |
caattgattattcattgtgatctaaagccaagcaatgttcttct |
10216723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 24 - 680
Target Start/End: Complemental strand, 10747637 - 10746981
Alignment:
| Q |
24 |
taccaccgtgccctatcaagggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactttc |
123 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||||| || || |||| |||| | ||||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
10747637 |
taccaccatgccctatcaagggtaggaaagacacaaaacaccataaattcatgttggtcgcagtgatagttagtgttgttttttttcttctcatactttc |
10747538 |
T |
|
| Q |
124 |
atttttcataactgtctacatgatgaggaaaagaaatcaaaagagatcttttgattccccagcaattgatcaactagctaaggtttcataccaagagtta |
223 |
Q |
| |
|
|||| | |||||| |||| | | || ||||||||| | || |||||| | ||||| || |||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
10747537 |
atttattataactatctattgggtaagaaaaagaaataacaaaagatctatcgattcacctacaattgatcaactagctacagtttcataccaagactta |
10747438 |
T |
|
| Q |
224 |
cacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgttgttg |
323 |
Q |
| |
|
|| ||||| | || ||||| ||||||||||||||||||||||||||||||||| || |||| ||||||| | || || ||| |||||| ||||| |
|
|
| T |
10747437 |
catcatggaacaaacggtttctcaagtagaaacttgatcggatcaggaagttttggttcagtgtacaaaggaaatcttgtgtccgaaaataatgctgttg |
10747338 |
T |
|
| Q |
324 |
cagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggt |
423 |
Q |
| |
|
| ||||| ||| | || || | || |||||||||||||| |||| ||||||||||| |||||| |||||| ||||||||||||| |||||| | |
|
|
| T |
10747337 |
ccgtaaaagtcctaaaccttcaaaagaagggagctcacaagagtttcattgttgaatgtaatgtactcaagaacattagacaccgaaatttagttaagat |
10747238 |
T |
|
| Q |
424 |
tttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcct |
523 |
Q |
| |
|
|||||| ||||||||||| | | ||||||||| ||| || |||||||||||||| ||| | ||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
10747237 |
tttaacgtgttgttctagtatagattacaaagttcaggagtttaaagctctagttttttattacataaaaaatggaagcttagaacaatggttgcatcct |
10747138 |
T |
|
| Q |
524 |
gagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaat |
623 |
Q |
| |
|
||| ||| |||| | | | ||||| ||| || ||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
10747137 |
gagtttttaaatgaagagcatccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaat |
10747038 |
T |
|
| Q |
624 |
gtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10747037 |
gtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatg |
10746981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 232 - 675
Target Start/End: Complemental strand, 19606279 - 19605836
Alignment:
| Q |
232 |
aaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgttgttgcagtaaag |
331 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| | || ||||| || || | ||||||| | | ||||||||||| ||| |||| || ||| |
|
|
| T |
19606279 |
aaccgatgggttctcggatagaaacttgattggatcaggaggcttcggttccgtgtataaaggaaatcttatgtcagaagataaagttattgctgttaag |
19606180 |
T |
|
| Q |
332 |
gtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacat |
431 |
Q |
| |
|
||| |||| || || |||||||||||||||||| |||||||||||| |||||||| ||| |||| |||||||| |||||| ||||||| | |
|
|
| T |
19606179 |
gtcctgaaccttgaaaagaagggagctcacaagagttttattactgaatgtaatgctctcaaaaatattagacatcgaaatttagttaagattttaactt |
19606080 |
T |
|
| Q |
432 |
gttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagacttt |
531 |
Q |
| |
|
|||||||||| | || ||||||||| |||||| ||||||||||| ||||| ||||||| |||||||||||||||||| ||||| ||||| | ||| | |
|
|
| T |
19606079 |
gttgttctagtattgataacaaaggtctagaattcaaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatcccgggacaat |
19605980 |
T |
|
| Q |
532 |
gaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcta |
631 |
Q |
| |
|
||||||| ||| ||||| ||||||||| ||| | |||||||| ||| | |||||||| |||||||||||||||| ||||||| |||||||||| | |
|
|
| T |
19605979 |
gaatgcagatcatccaagaacattgaagtttgagcaaagattaaatatccttgtcgatgtttcttctgcattacattaccttcatcatgaatgtgagcaa |
19605880 |
T |
|
| Q |
632 |
ttagtccttcattgtgatctaaagccaagcaatgtccttcttga |
675 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19605879 |
ttggtccttcattgtgatctaaagccaagcaatgtccttattga |
19605836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 250 - 678
Target Start/End: Original strand, 10558715 - 10559143
Alignment:
| Q |
250 |
tagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgttgttgcagtaaaggtcttgaatctgcnnnnn |
349 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||| || | ||||||| | | ||||||||||| ||| |||| || |||||| || | || |
|
|
| T |
10558715 |
tagaaacttgattggatcaggaggctttggttcggtgtataaaggaaatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaag |
10558814 |
T |
|
| Q |
350 |
nntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaatt |
449 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||| ||||| ||| |||| |||||| |||||||| ||||||| ||||||||||| | ||| |
|
|
| T |
10558815 |
aatggagctcacaagagttttattaccgaatgtaatgcactaaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgatt |
10558914 |
T |
|
| Q |
450 |
acaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaac |
549 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||| ||| | || |||||| | | | |||| |
|
|
| T |
10558915 |
acaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaaactggttgcattcaaggatgatgaatgtagagcaaccaag |
10559014 |
T |
|
| Q |
550 |
aacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgat |
649 |
Q |
| |
|
| ||||| | ||| | | ||| | || ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
10559015 |
agcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgat |
10559114 |
T |
|
| Q |
650 |
ctaaagccaagcaatgtccttcttgatga |
678 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
10559115 |
ctaaagccaagcaatgtccttattgatga |
10559143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 197 - 680
Target Start/End: Complemental strand, 10588879 - 10588396
Alignment:
| Q |
197 |
ctagctaaggtttcataccaagagttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaa |
296 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| ||||||||||| ||| |||||||||| ||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
10588879 |
ctagttaaggtttcataccaagaactacatcaaggaactgatggattctcagatggaaacttgattggatcaggaagtttttgttccgtatacaaaggaa |
10588780 |
T |
|
| Q |
297 |
atatagtttcagaagataatgttgttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaa |
396 |
Q |
| |
|
| | || ||| ||||||| |||||| | ||||| |||| || || ||| | ||||||||||||| ||||||||||||||||| || |
|
|
| T |
10588779 |
ttctcgtatcacaagataaatctgttgctatcaaggttctgaaccttaaaaagaagggagctgataagagttttattgccgaatgtaatgcactcaagaa |
10588680 |
T |
|
| Q |
397 |
cattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaat |
496 |
Q |
| |
|
|| |||| |||||||||| ||| ||||||||||||||||| | || |||| ||||||||||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
10588679 |
tgttagacatcgaaatttggccaagattttaacatgttgttctggtactgattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaat |
10588580 |
T |
|
| Q |
497 |
ggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgctt |
596 |
Q |
| |
|
||||| |||||||| ||| | ||||| || | ||||| || | | ||||| ||| ||| |||||| | |||||||||| |||| |||||| |||||| |
|
|
| T |
10588579 |
ggaagtttagaacaatggcttcatccatggaatgtgaattcagagcatccaagaacgttggaccttgttcatagattaaatatcactatcgatattgctt |
10588480 |
T |
|
| Q |
597 |
ctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
10588479 |
ctgcactacattatcttcatcatgaatgtgagcaggtggtccttcattgtgatataaagccaagcaacgtccttcttgacgatg |
10588396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 201 - 679
Target Start/End: Complemental strand, 9836773 - 9836295
Alignment:
| Q |
201 |
ctaaggtttcataccaagagttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatat |
300 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||| ||||| |||||||| ||||| |||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
9836773 |
ctaaggtttcataccaagaactacatcatggaactgatgagttctcagatagaaatttgattggatcaggaagttttggtaccgtatacaaaggaaatat |
9836674 |
T |
|
| Q |
301 |
agtttcagaagataatgttgttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacatt |
400 |
Q |
| |
|
|| ||| ||||||| |||||||| ||||||| |||| || || ||||| ||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
9836673 |
tgtatcacaagataaagttgttgctataaaggttctgaacctcaaaaagaagggagctcataagagttttattgctgaatgtaatgcactcaaaaatatt |
9836574 |
T |
|
| Q |
401 |
cgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaa |
500 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||| | |||| |||||| ||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
9836573 |
agacatcgaaatttggtcaaggttataacatgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaaatggaa |
9836474 |
T |
|
| Q |
501 |
gcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgc |
600 |
Q |
| |
|
|||||||||| ||| | |||| ||| || || || | ||| | |||||||||||||| | | ||| |||| ||| ||| ||| |||||||||| |
|
|
| T |
9836473 |
gcttagaacaatggctttatccctggacagtggattcagagtatcctagaacattgaaccttgttcaaagactaaatatctccattgatattgcttctgc |
9836374 |
T |
|
| Q |
601 |
attacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgat |
679 |
Q |
| |
|
|||||||||||||||| | |||||||||| | | ||| ||||||||||| | ||||||||||| ||||||| |||||| |
|
|
| T |
9836373 |
attacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgat |
9836295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 250 - 680
Target Start/End: Original strand, 7192818 - 7193248
Alignment:
| Q |
250 |
tagaaacttgatcggatcaggaagttttggttcggtatacagaggaaatatagtttcagaagataatgttgttgcagtaaaggtcttgaatctgcnnnnn |
349 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| || |||| ||||||| | | ||||||||||| |||||||| || |||||| |||| || | |
|
|
| T |
7192818 |
tagaaacttagttggatcaggaagctttggttctgtgtacaaaggaaatcttgaatcagaagataaagttgttgccgtgaaggtcatgaaccttcaaaag |
7192917 |
T |
|
| Q |
350 |
nntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaatt |
449 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||| ||||| ||| |||| ||||||||||||||| |||| ||||||||||| || ||| ||| |
|
|
| T |
7192918 |
aagggagctcacaagagtttcattgctgaatgtaatgcactaaaaaatattagacatcgaaatttggttaagattttgacatgttgttccagtacagatt |
7193017 |
T |
|
| Q |
450 |
acaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcctgaga-ctttgaatgcaaatcctccaa |
548 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||| ||| |||||||| ||| | |||||| | | || || |
|
|
| T |
7193018 |
acaaaggtcaagaatttaaagctttagtctttgaatacatgaacaacggaagcttagaacaatggctacatcct-agatcagtgaatgtagagaatcaaa |
7193116 |
T |
|
| Q |
549 |
caacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtga |
648 |
Q |
| |
|
||| ||| |||||| | | ||||| || ||| | ||| |||| | || ||||||||| ||||||| |||||||||| || || |||||||||| |
|
|
| T |
7193117 |
gaacgttggaccttgatcaaagattgaatatcgctgttgatattgcctttgtattacattaccttcatcttgaatgtgagcaatcgatcattcattgtga |
7193216 |
T |
|
| Q |
649 |
tctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
7193217 |
tctaaagccaagcaatgtccttcttgacgatg |
7193248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 356 - 516
Target Start/End: Original strand, 9825019 - 9825180
Alignment:
| Q |
356 |
gctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaag |
455 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| ||| |||| ||||||||||||||| |||||||||||| |||||| | ||||||||| |
|
|
| T |
9825019 |
gctcacaagagttttattaccgaatgtaatgaactcaaaaatattagacatcgaaatttggttaagattttaacatgtttttctagtatcgattacaaag |
9825118 |
T |
|
| Q |
456 |
gtcaagaatttaaagctctagtatttgaatacatgaaaaat-ggaagcttagaacagtggtt |
516 |
Q |
| |
|
| |||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||| ||||| |
|
|
| T |
9825119 |
ggcaagaattcaaagctctagtttttgagtacatgcaaaatgggaagcttagaacaatggtt |
9825180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 200 - 678
Target Start/End: Complemental strand, 10652648 - 10652170
Alignment:
| Q |
200 |
gctaaggtttcataccaagagttacacgtaggaaccgatggattctcggatagaaacttgatcggatcaggaagttttggttcggtatacagaggaaata |
299 |
Q |
| |
|
|||| |||||||||| |||| | ||| |||||| |||||||| || | ||||||| || | |||| ||||||||||||||| || |||| ||||||| |
|
|
| T |
10652648 |
gctagggtttcatacaaagaccttcaccaaggaactgatggattttctgctagaaacctggttggattaggaagttttggttctgtgtacaaaggaaatc |
10652549 |
T |
|
| Q |
300 |
tagtttcagaagataatgttgttgcagtaaaggtcttgaatctgcnnnnnnntggtgctcacaagagttttattgatgaatgtaatgcactcaaaaacat |
399 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||| |||| || | || |||||||||| || ||| ||||||||||||||| ||||| || |
|
|
| T |
10652548 |
ttgcatcagaagataaagttgttgccataaaggtcctgaaccttcaaaaaaagggatctcacaagagcttcgttgttgaatgtaatgcactaaaaaatat |
10652449 |
T |
|
| Q |
400 |
tcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatgga |
499 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||| || || |||||||||||||||| ||||| ||| |||| |||||||||||||| || ||| |
|
|
| T |
10652448 |
gaggcatagaaatttggttaaggttttgacatgttgttcgagtaccgattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaacgga |
10652349 |
T |
|
| Q |
500 |
agcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctg |
599 |
Q |
| |
|
| | ||||||| ||| ||||||| | | |||||||| || || || ||| |||||| | | || | || ||||| | || ||||||||| |
|
|
| T |
10652348 |
aacctagaacaatggctacatccaggtataatgaatgcagggattcaaagaatgttggaccttgatcaacgactgaatatcattgttgacattgcttctg |
10652249 |
T |
|
| Q |
600 |
cattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatga |
678 |
Q |
| |
|
||||||||| ||||||| |||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10652248 |
tattacattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatga |
10652170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 356 - 522
Target Start/End: Complemental strand, 10660375 - 10660209
Alignment:
| Q |
356 |
gctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaag |
455 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||| ||||| || | || |||||||||| |||||||| ||||||||||| || ||| ||||||||| |
|
|
| T |
10660375 |
gctcacaagagcttcattgttgaatgtaatgcactaaaaaatatgaggcatagaaatttggtcaaggttttgacatgttgttcaagtacagattacaaag |
10660276 |
T |
|
| Q |
456 |
gtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcc |
522 |
Q |
| |
|
||||||| ||||| ||| |||| |||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
10660275 |
gtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatggctacatcc |
10660209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 358 - 522
Target Start/End: Original strand, 10550705 - 10550869
Alignment:
| Q |
358 |
tcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggt |
457 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||| ||| | ||| ||||| | ||||| |||| || |||||||| |||||| |||||||||| |
|
|
| T |
10550705 |
tcacaagagtttcattgctgaatgtaatgcactaaaaaatattaggcacagaaatctagttaaaattttgacttgttgttccagcacagattacaaagga |
10550804 |
T |
|
| Q |
458 |
caagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaacagtggttacatcc |
522 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||| |||||||| ||||||| | ||||| ||||| |
|
|
| T |
10550805 |
agtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
10550869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 358 - 510
Target Start/End: Complemental strand, 9850988 - 9850836
Alignment:
| Q |
358 |
tcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggt |
457 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||| |||| ||||||||||||||| ||||||| | ||||||||| | |||||||||| |
|
|
| T |
9850988 |
tcacaagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaaggg |
9850890 |
T |
|
| Q |
458 |
caagaatttaaa-gctctagtatttgaatacatgaaaaatggaagcttagaaca |
510 |
Q |
| |
|
|| ||||| ||| |||||||| ||| | ||||||| |||||||||||||||||| |
|
|
| T |
9850889 |
catgaattcaaaagctctagttttttagtacatgataaatggaagcttagaaca |
9850836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 601 - 680
Target Start/End: Complemental strand, 10660130 - 10660051
Alignment:
| Q |
601 |
attacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||| ||||||| |||||||||| | ||| |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10660130 |
attacattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatg |
10660051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 9825258 - 9825325
Alignment:
| Q |
611 |
cttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatga |
678 |
Q |
| |
|
|||||||| || ||||||| |||| |||||||||||||| |||||||||| ||| ||||| ||||||| |
|
|
| T |
9825258 |
cttcatcgtgattgtgagcaattaatccttcattgtgatataaagccaagtaatatccttgttgatga |
9825325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 10601484 - 10601573
Alignment:
| Q |
76 |
gttgatagcagtgatagttagtgtggtttcttttattctcatactttcatttttcataactgtctacatgatgaggaaaagaaatcaaaa |
165 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| | |||||||||||||| || ||||| || |||| | ||||||||||||| ||||| |
|
|
| T |
10601484 |
gttgatggcagtgatagttggtgtggtgtcttctcttctcatactttcaattatcatagctatctattgggtgaggaaaagaaaccaaaa |
10601573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 639 - 680
Target Start/End: Original strand, 35376658 - 35376699
Alignment:
| Q |
639 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
35376658 |
ttcattgtgatgttaagccaagcaatgttcttcttgatgatg |
35376699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 408 - 680
Target Start/End: Original strand, 7264 - 7536
Alignment:
| Q |
408 |
gaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttaga |
507 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7264 |
gaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
7363 |
T |
|
| Q |
508 |
acagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtgatagattaaacatcatcatcgatgttgcttctgcattacat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7364 |
acagtggttacatcctgagactttgaatgcaaatcctccaataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacat |
7463 |
T |
|
| Q |
608 |
tatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
|| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7464 |
taacttcatcgagaatgtgagcaattaatacttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
7536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 356 - 508
Target Start/End: Complemental strand, 31467452 - 31467300
Alignment:
| Q |
356 |
gctcacaagagttttattgatgaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaag |
455 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||| ||| |||||||||||||||||||| |||||||| | ||||| || ||| ||| ||||| |
|
|
| T |
31467452 |
gctcacaagagtttccttgctgaatgcaatgcactcaaaaatattagacaccgaaatttggttaagattttaacaagctgttccagtacagatttcaaag |
31467353 |
T |
|
| Q |
456 |
gtcaagaatttaaagctctagtatttgaatacatgaaaaatggaagcttagaa |
508 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||| |||||||||||| |
|
|
| T |
31467352 |
atcaagaatttaaagctcttgttttcgagtacatgaaaaacggaagcttagaa |
31467300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 31467737 - 31467687
Alignment:
| Q |
71 |
ttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactt |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
31467737 |
ttcaagttgatagcagtgatagttagtgtggtttcttttcttcttatactt |
31467687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 590 - 679
Target Start/End: Complemental strand, 31467218 - 31467129
Alignment:
| Q |
590 |
gttgcttctgcattacattatcttcatcgagaatgtgagctattagtccttcattgtgatctaaagccaagcaatgtccttcttgatgat |
679 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||| ||| | ||| ||||||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
31467218 |
gttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttcttcttgatgat |
31467129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 39875899 - 39875858
Alignment:
| Q |
639 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
39875899 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatg |
39875858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 39884022 - 39883981
Alignment:
| Q |
639 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
39884022 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatg |
39883981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 39890976 - 39890935
Alignment:
| Q |
639 |
ttcattgtgatctaaagccaagcaatgtccttcttgatgatg |
680 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
39890976 |
ttcattgtgatttaaaaccaagcaatgtccttcttgaagatg |
39890935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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