View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_7 (Length: 412)
Name: NF5111_low_7
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 18931566 - 18931186
Alignment:
| Q |
16 |
actacttatatatatagcttgctgttgaaggaacaaacaacgttgccaaaccctttcttccacaatatataagttgagagaaaatagggttttctcagtc |
115 |
Q |
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| T |
18931566 |
actacttatatatatagcttgctgttgaaggaacaaacaacgttgccaaaccctttcttccacagtatataacttgagagaaattaggcttt-ctcagtc |
18931468 |
T |
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| Q |
116 |
agtgaaaagtatcttgtgaccatgactaatatgagacttgaagaactagaagttctactggaaccaagggttgatttatatgatcttgctgcaaatgaat |
215 |
Q |
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| T |
18931467 |
ggtgaaaagtatcttgtgaccatgactaatatgagacttgaagaactagaagttctactggaaccaagggttgatttatatgatcttgctgcaaatgaat |
18931368 |
T |
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| Q |
216 |
tcgacttcagagagagttttgtaaatatgggttggatggaatatttctatgcagaaaagaaacctatctacgccgagcttgtaaaagaattttggatgag |
315 |
Q |
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| T |
18931367 |
tcgacttcagagtgagttttgtaaatatgggttggatggaatatttctatgcagaaaagaaacctatctacaccgagcttgtaaaagaattttggatgag |
18931268 |
T |
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| Q |
316 |
tgcgagggttaataacgggagcatctgtggttatgttcaaggaaaggtggttataatctctttggaatttttgccacaggtt |
397 |
Q |
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| T |
18931267 |
tgcaagggttgataatgggagcatctatggttatgttcaaggaaaggtggttataatctctttggaatttttgccacaggtt |
18931186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 140 - 397
Target Start/End: Complemental strand, 36845751 - 36845494
Alignment:
| Q |
140 |
actaatatgagacttgaagaactagaagttctactggaaccaagggttgatttatatgatcttgctgcaaatgaattcgacttcagagagagttttgtaa |
239 |
Q |
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| T |
36845751 |
actaatatggaatttgaagaactagaagttctactggaaccaagggttgacctatatgatcttgctgcaaatgaatttgacttcagagaaaattttgtgg |
36845652 |
T |
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| Q |
240 |
atatgggttggatggaatatttctatgcagaaaagaaacctatctacgccgagcttgtaaaagaattttggatgagtgcgagggttaataacgggagcat |
339 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
36845651 |
atatgggttggatggaatacttctgtgcagaaaagaaacctatctacaccgagcttgtaaaagaattttggatgagtgcaagggttgataatgggagcat |
36845552 |
T |
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| Q |
340 |
ctgtggttatgttcaaggaaaggtggttataatctctttggaatttttgccacaggtt |
397 |
Q |
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| T |
36845551 |
ctgtggttatgttcaaggaaaggtggctataatctctttggaatttttgccacaggtt |
36845494 |
T |
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