View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5111_low_8 (Length: 404)
Name: NF5111_low_8
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Complemental strand, 11137063 - 11136677
Alignment:
| Q |
7 |
gcaatcaactccttataaatccaaaataaaagtgcagaaactttataaactagataaaaactattgtctataatggcttgttaaaacttattttcattgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
11137063 |
gcaatcaactccttataaatccaaaataaaagtgcagaaactttataaactagataaaaactattgtctataacggcttgttaaaacatattttcattgc |
11136964 |
T |
|
| Q |
107 |
catnnnnnnnnnnnncttaattccattctactttaatttggaggagggaagaaaatggcatcggcagtcctctttgaacggaagagtttctcaacttctg |
206 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11136963 |
cataaaaaataaaaacttaattccattctacttcaatttggaggagggaagaaaatggcatcggcagtcctctttgaacggaagagtttctcaacttctg |
11136864 |
T |
|
| Q |
207 |
gatcgacattgaaagcagcttgtagaactgtaggtgatagcgctttccacaccgaagagcttccagccatgtgtgtaaatacaggactgcgaaaaacaac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11136863 |
gatcgacattgaaagcagcttgtagaactgtaggtgatagcgccttccacaccgaagagcttccagccatgtgtgtaaatacaggactgcgaaaaacaac |
11136764 |
T |
|
| Q |
307 |
aataataatcacattaagaaacaacttataagcataatcaaaataaggttaaaaggtaagaaaaactcacttaggggtagtgatgat |
393 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
11136763 |
aataataatcacattaagaaagaacttataagcataatcaaaataaggttacaaggtaagaaaaactcacttaggggtagtgatgat |
11136677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 23257936 - 23258258
Alignment:
| Q |
6 |
agcaatcaactccttataaatccaaaataaaagtgcagaaactttataaactagataaaaactattgtctataatggcttgttaaaacttattttcattg |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||| || || ||||||| || || |
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|
| T |
23257936 |
agcaatcaactcctcataaatccaaaataaaagtgcagaaactttataaagtagataaaaactactgtctataacgacttattgaagcttatttccaatg |
23258035 |
T |
|
| Q |
106 |
ccatnnnnnnnnnnnn----cttaattccattctactttaatttggaggagggaagaaaatggcatcggcagtcctctttgaacggaagagtttctcaac |
201 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
23258036 |
ccataaaagaagaactaaaacttatttccattctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaac |
23258135 |
T |
|
| Q |
202 |
ttctggatcgacattgaaagcagcttgtagaactgtaggtgatagcgctttccacaccgaagagcttccagccatgtgtgtaaatacaggactgcgaaaa |
301 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
23258136 |
ttctggatcaacattgaaagcagcctgcagaactgtaggtgatagtgccttccacaccgaagaacttccagccatgtgtgtaaatacaggactgc-aaaa |
23258234 |
T |
|
| Q |
302 |
acaacaataataatcacattaaga |
325 |
Q |
| |
|
|||||||| |||| |||| ||||| |
|
|
| T |
23258235 |
acaacaatcataaccacagtaaga |
23258258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 23275814 - 23276136
Alignment:
| Q |
6 |
agcaatcaactccttataaatccaaaataaaagtgcagaaactttataaactagataaaaactattgtctataatggcttgttaaaacttattttcattg |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||| || || ||||||| || || |
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|
| T |
23275814 |
agcaatcaactcctcataaatccaaaataaaagtgcagaaactttataaagtagataaaaactactgtctataacgacttattgaagcttatttccaatg |
23275913 |
T |
|
| Q |
106 |
ccatnnnnnnnnnnnn----cttaattccattctactttaatttggaggagggaagaaaatggcatcggcagtcctctttgaacggaagagtttctcaac |
201 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
23275914 |
ccataaaagaagaactaaaacttatttccattctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaac |
23276013 |
T |
|
| Q |
202 |
ttctggatcgacattgaaagcagcttgtagaactgtaggtgatagcgctttccacaccgaagagcttccagccatgtgtgtaaatacaggactgcgaaaa |
301 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
23276014 |
ttctggatcaacattgaaagcagcctgcagaactgtaggtgatagtgccttccacaccgaagaacttccagccatgtgtgtaaatacaggactgc-aaaa |
23276112 |
T |
|
| Q |
302 |
acaacaataataatcacattaaga |
325 |
Q |
| |
|
|||||||| |||| |||| ||||| |
|
|
| T |
23276113 |
acaacaatcataaccacagtaaga |
23276136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 122 - 324
Target Start/End: Original strand, 27542695 - 27542896
Alignment:
| Q |
122 |
cttaattccattctactttaatttggaggagggaagaaaatggcatcggcagtcctctttgaacggaagagtttctcaacttctggatcgacattgaaag |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
27542695 |
cttatttccattctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatctacattgaaag |
27542794 |
T |
|
| Q |
222 |
cagcttgtagaactgtaggtgatagcgctttccacaccgaagagcttccagccatgtgtgtaaatacaggactgcgaaaaacaacaataataatcacatt |
321 |
Q |
| |
|
|||| || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||| | |
|
|
| T |
27542795 |
cagcctgcagaaccgtaggcgatagcgccttccacaccgaagaacttccagccatgtgtgtaaatacaggactgc-aaaaacaacaatcataaccacagt |
27542893 |
T |
|
| Q |
322 |
aag |
324 |
Q |
| |
|
||| |
|
|
| T |
27542894 |
aag |
27542896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 23268513 - 23268572
Alignment:
| Q |
122 |
cttaattccattctactttaatttggaggagggaagaaaatggcatcggcagtcctcttt |
181 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
23268513 |
cttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcctcttt |
23268572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 23258555 - 23258593
Alignment:
| Q |
355 |
ttaaaaggtaagaaaaactcacttaggggtagtgatgat |
393 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
23258555 |
ttaaaagttaagaaaaacttacttaggggtagtgatgat |
23258593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 23276433 - 23276471
Alignment:
| Q |
355 |
ttaaaaggtaagaaaaactcacttaggggtagtgatgat |
393 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
23276433 |
ttaaaagttaagaaaaacttacttaggggtagtgatgat |
23276471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 27542603 - 27542632
Alignment:
| Q |
21 |
ataaatccaaaataaaagtgcagaaacttt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27542603 |
ataaatccaaaataaaagtgcagaaacttt |
27542632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 27542963 - 27542996
Alignment:
| Q |
360 |
aggtaagaaaaactcacttaggggtagtgatgat |
393 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
27542963 |
aggtaagaaaaactcacttaggggtggtgatgat |
27542996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 8985282 - 8985467
Alignment:
| Q |
131 |
attctactttaatttggaggagggaagaaaatggcatcggcagtcctctttgaacggaagagtttctcaacttctggatcgacattgaaagcagcttgta |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || | |
|
|
| T |
8985282 |
attctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatctacattgaaagcagtctgca |
8985381 |
T |
|
| Q |
231 |
gaactgtaggtgatagcgctttccacaccgaagagcttccagccatgtgtgtaaatacaggactgcgaaaaacaacaataataatca |
317 |
Q |
| |
|
||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
8985382 |
gaactctaggtgatagggccttccacaccgaagaacttccagccatgtgtgtaaatacaggactg-aaaaaacaaaaatcataatca |
8985467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 8984601 - 8984697
Alignment:
| Q |
7 |
gcaatcaactccttataaatccaaaataaaag----tgcagaaactttataaactagataaaaactattgtctataatggcttgttaaaacttattt |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||| ||||| || || ||||||| |
|
|
| T |
8984601 |
gcaatcaactccttttaaatccaaaataaaaaaaattccagaaacttcataaagtagataaaaactattgtctataacggcttattgaagcttattt |
8984697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 8986042 - 8986077
Alignment:
| Q |
355 |
ttaaaaggtaagaaaaactcacttaggggtagtgat |
390 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8986042 |
ttaaaagttaagaaaaactcacttaggggtagtgat |
8986077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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