View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5111_low_9 (Length: 389)
Name: NF5111_low_9
Description: NF5111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5111_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 40517864 - 40518143
Alignment:
| Q |
22 |
ccgaggtgccgttgttgttgatgttcatcttctcgaccaaaatttggaatgtgaattttaatttgtttggaattggttatgttatgggtggcctttttaa |
121 |
Q |
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| T |
40517864 |
ccgaggtgccgttgttgtcgatgttcatcttctcgaccaaaatttggaatgtgaattttaatttgtttggaattggttatgttatgggtggcctttttaa |
40517963 |
T |
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| Q |
122 |
ctagctgaaaggtttaacaattaatttgccaagcaannnnnnnaggggtatttgccaagcaattatatatgcatacatgatgaattcgatgatgtacaaa |
221 |
Q |
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| T |
40517964 |
ctagctgaaaggtttaacaattaatttggcaagcaatttttttaggggtatttgccaagcaattatatatgcatacatgatgaattcgatgatgtacaaa |
40518063 |
T |
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| Q |
222 |
tgagacgagttttatattatgtacaagctagtttttacttttgaatcaataaaccttagtattaaattaaatgataatat |
301 |
Q |
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| T |
40518064 |
tgagacgagttttatattatgtacaagctagtttttacttttgaatcaataaaccttactattaaattaaatgataatat |
40518143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 40518203 - 40518282
Alignment:
| Q |
300 |
atcattttagttatgaatgttagaccaagcttacatagtttacttctctggtcaacgtttatgtctttttcacaattcat |
379 |
Q |
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| T |
40518203 |
atcattttagttatgaatgttagaccaagcttacatagtttaattctctggtcaacgtttatgtctttttcacaattcat |
40518282 |
T |
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